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    RING/FYVE/PHD zinc finger superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837987, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RING/FYVE/PHD zinc finger superfamily protein
    Primary source
    TAIR:AT1G14260
    Locus tag
    AT1G14260
    See related
    Araport:AT1G14260
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14L17.2; F14L17_2
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (4872856..4874907)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene GDA1/CD39 nucleoside phosphatase family protein Neighboring gene GDA1/CD39 nucleoside phosphatase family protein Neighboring gene CAAX amino terminal protease family protein Neighboring gene phytochrome kinase substrate 2 Neighboring gene sphingoid base hydroxylase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional analysis of the RING-type ubiquitin ligase family of Arabidopsis. Stone SL, et al. Plant Physiol, 2005 Jan. PMID 15644464, Free PMC Article
    2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001332109.1
    NM_101292.3
    NM_179329.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within protein ubiquitination IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RING/FYVE/PHD zinc finger superfamily protein
    NP_172878.1
    • RING/FYVE/PHD zinc finger superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT2G02960.3); Has 1793 Blast hits to 1789 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 745; Fungi - 130; Plants - 638; Viruses - 54; Other Eukaryotes - 226 (source: NCBI BLink).
    NP_849660.1
    • RING/FYVE/PHD zinc finger superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT2G02960.3); Has 1793 Blast hits to 1789 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 745; Fungi - 130; Plants - 638; Viruses - 54; Other Eukaryotes - 226 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4872856..4874907
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101292.3 → NP_172878.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172878.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W2B4, Q4PS45, Q8GXP5, Q8LFI8
      Conserved Domains (2) summary
      smart00744
      Location:57 → 103
      RINGv; The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins
      pfam12428
      Location:109 → 226
      DUF3675; Protein of unknown function (DUF3675)

    2. NM_179329.3 → NP_849660.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849660.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W2B4, Q4PS45, Q8GXP5, Q8LFI8
      Conserved Domains (2) summary
      smart00744
      Location:57 → 103
      RINGv; The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins
      pfam12428
      Location:109 → 226
      DUF3675; Protein of unknown function (DUF3675)

    3. NM_001332109.1 → NP_001323144.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W2B4, Q4PS45, Q8GXP5, Q8LFI8
      Conserved Domains (2) summary
      smart00744
      Location:57 → 103
      RINGv; The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins
      pfam12428
      Location:109 → 226
      DUF3675; Protein of unknown function (DUF3675)
    Nucleotide Protein
    Heading Accession and Version

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