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    inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein, putative (DUF784) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 5008239, updated on 18-Sep-2024

    Summary

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    Official Full Name
    inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein, putative (DUF784)
    Primary source
    TAIR:AT5G34908
    Locus tag
    AT5G34908
    See related
    Araport:AT5G34908
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Summary
    Encodes a ECA1 gametogenesis related family protein
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (13225067..13225315)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene ECA1 gametogenesis family protein (DUF784) Neighboring gene miscRNA Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein, putative (DUF784)
    NP_001078635.1
    • LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF784) (TAIR:AT5G34905.1); Has 112 Blast hits to 112 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 112; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      13225067..13225315
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001085166.1 → NP_001078635.1  inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein, putative (DUF784) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078635.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B3H7M5
      Conserved Domains (1) summary
      cl05275
      Location:1 → 82
      Prolamin_like; Prolamin-like
    Nucleotide Protein
    Heading Accession and Version

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