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    Amidase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830627, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Amidase family protein
    Primary source
    TAIR:AT5G07360
    Locus tag
    AT5G07360
    See related
    Araport:AT5G07360
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T2I1.70; T2I1_70
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    13
    Sequence:
    Chromosome: 5; NC_003076.8 (2326687..2330462, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Calreticulin family protein Neighboring gene TUDOR-SN protein 1 Neighboring gene inositol polyphosphate kinase 2 alpha Neighboring gene uncharacterized protein Neighboring gene respiratory burst oxidase homolog A Neighboring gene forkhead-associated domain-containing protein / FHA domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001085071.1
    NM_001342933.1
    NM_120818.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Amidase family protein
    NP_001078540.1
    • Amidase family protein; FUNCTIONS IN: amidase activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amidase (InterPro:IPR000120); BEST Arabidopsis thaliana protein match is: Amidase family protein (TAIR:AT3G25660.1); Has 19044 Blast hits to 19036 proteins in 2473 species: Archae - 260; Bacteria - 10805; Metazoa - 539; Fungi - 1354; Plants - 382; Viruses - 0; Other Eukaryotes - 5704 (source: NCBI BLink).
    NP_196353.2
    • Amidase family protein; FUNCTIONS IN: amidase activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor; INVOLVED IN: acrylonitrile catabolic process, aldoxime metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amidase (InterPro:IPR000120); BEST Arabidopsis thaliana protein match is: Amidase family protein (TAIR:AT3G25660.1); Has 19119 Blast hits to 19111 proteins in 2459 species: Archae - 260; Bacteria - 10767; Metazoa - 545; Fungi - 1387; Plants - 384; Viruses - 0; Other Eukaryotes - 5776 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2326687..2330462 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120818.5 → NP_196353.2  Amidase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196353.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UM98, A0A384KUD2, F4K6N3, Q9LY24
      Conserved Domains (1) summary
      COG0154
      Location:199 → 634
      GatA; Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase [Translation, ribosomal structure and biogenesis]

    2. NM_001342933.1 → NP_001331984.1  Amidase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UM98, A0A384KUD2, F4K6N3, Q9LY24
      Conserved Domains (1) summary
      COG0154
      Location:199 → 634
      GatA; Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase [Translation, ribosomal structure and biogenesis]

    3. NM_001085071.1 → NP_001078540.1  Amidase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078540.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4K6N2, Q0WR63
      Conserved Domains (1) summary
      COG0154
      Location:199 → 627
      GatA; Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
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