U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    CZF1 zinc finger (CCCH-type) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818605, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CZF1
    Official Full Name
    zinc finger (CCCH-type) family protein
    Primary source
    TAIR:AT2G40140
    Locus tag
    AT2G40140
    See related
    Araport:AT2G40140
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    (SALT-INDUCIBLE ZINC FINGER 2; ATSZF2; SZF2; T7M7.3; T7M7_3; ZFAR1
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CZF1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (16771997..16774734)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene ncRNA Neighboring gene Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein Neighboring gene TRICHOME BIREFRINGENCE-LIKE 28 Neighboring gene uncharacterized protein Neighboring gene trichome birefringence-like protein (DUF828)

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The CCCH-type zinc finger proteins AtSZF1 and AtSZF2 regulate salt stress responses in Arabidopsis. Sun J, et al. Plant Cell Physiol, 2007 Aug. PMID 17609218
    2. Expression profiling and mutant analysis reveals complex regulatory networks involved in Arabidopsis response to Botrytis infection. AbuQamar S, et al. Plant J, 2006 Oct. PMID 16925600
    3. The cold-induced early activation of phospholipase C and D pathways determines the response of two distinct clusters of genes in Arabidopsis cell suspensions. Vergnolle C, et al. Plant Physiol, 2005 Nov. PMID 16258011, Free PMC Article
    4. Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Efroni I, et al. Dev Cell, 2013 Feb 25. PMID 23449474, Free PMC Article
    5. Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. Lee TA, et al. Plant Cell, 2019 Nov. PMID 31519798, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001036440.2
    NM_129572.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
    acts_upstream_of_or_within defense response to fungus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within response to cold IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to salt stress IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    zinc finger (CCCH-type) family protein
    NP_001031517.1
    • CZF1; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: salt-inducible zinc finger 1 (TAIR:AT3G55980.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_181543.1
    • CZF1; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: salt-inducible zinc finger 1 (TAIR:AT3G55980.1); Has 1196 Blast hits to 1143 proteins in 183 species: Archae - 4; Bacteria - 47; Metazoa - 401; Fungi - 61; Plants - 441; Viruses - 2; Other Eukaryotes - 240 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16771997..16774734
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129572.5 → NP_181543.1  zinc finger (CCCH-type) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181543.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9XEE6
      UniProtKB/TrEMBL
      A0A178VP72, A0A5S9X663, A0A654F1U6
      Conserved Domains (3) summary
      smart00356
      Location:258 → 279
      ZnF_C3H1; zinc finger
      sd00045
      Location:76 → 109
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:76 → 145
      Ank_2; Ankyrin repeats (3 copies)

    2. NM_001036440.2 → NP_001031517.1  zinc finger (CCCH-type) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031517.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9XEE6
      UniProtKB/TrEMBL
      A0A178VP72, A0A5S9X663, A0A654F1U6
      Conserved Domains (3) summary
      smart00356
      Location:258 → 279
      ZnF_C3H1; zinc finger
      sd00045
      Location:76 → 109
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:76 → 145
      Ank_2; Ankyrin repeats (3 copies)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9XEE6.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools