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    LOC112628619 40S ribosomal protein S17 [ Theropithecus gelada (gelada) ]

    Gene ID: 112628619, updated on 18-Sep-2024

    Summary

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    Gene symbol
    LOC112628619
    Gene description
    40S ribosomal protein S17
    See related
    Ensembl:ENSTGEG00000004447 Ensembl:ENSTGEG00000004498
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Theropithecus gelada
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Theropithecus
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    Genomic context

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    See LOC112628619 in Genome Data Viewer
    Location:
    chromosome: 7b
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    100 current Tgel_1.0 (GCF_003255815.1) 7b NC_037675.1 (2623484..2731545)

    Chromosome 7b - NC_037675.1Genomic Context describing neighboring genes Neighboring gene actin, cytoskeletal 4-like Neighboring gene serine/arginine-rich splicing factor 9 pseudogene Neighboring gene adaptor related protein complex 3 subunit beta 2 Neighboring gene MKI67 FHA domain-interacting nucleolar phosphoprotein-like Neighboring gene phosphodiesterase 8A

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037675.1 Chromosome 7b Reference Tgel_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA 3'-UTR binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mRNA regulatory element binding translation repressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ribosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation factor activity, RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of cytoplasmic translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in neuron projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    40S ribosomal protein S17; cytoplasmic polyadenylation element-binding protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Theropithecus gelada Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Tgel_1.0 Primary Assembly

    Genomic

    1. NC_037675.1 Reference Tgel_1.0 Primary Assembly

      Range
      2623484..2731545
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025391618.1 → XP_025247403.1  cytoplasmic polyadenylation element-binding protein 1 isoform X1

      Conserved Domains (5) summary
      cd12723
      Location:309 → 411
      RRM1_CPEB1; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
      cd12725
      Location:422 → 507
      RRM2_CPEB1; RNA recognition motif 2 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
      pfam00833
      Location:526 → 639
      Ribosomal_S17e; Ribosomal S17
      pfam16366
      Location:499 → 525
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
      pfam16368
      Location:1 → 307
      CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus

    2. XM_025391621.1 → XP_025247406.1  cytoplasmic polyadenylation element-binding protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8D2EEZ9, A0A8D2JW49
      Related
      ENSTGEP00000005350.1, ENSTGET00000006486.1
      Conserved Domains (4) summary
      cd12723
      Location:309 → 411
      RRM1_CPEB1; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
      cd12725
      Location:422 → 507
      RRM2_CPEB1; RNA recognition motif 2 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
      pfam16366
      Location:499 → 554
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
      pfam16368
      Location:1 → 307
      CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus

    3. XM_025391623.1 → XP_025247408.1  cytoplasmic polyadenylation element-binding protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A8D2EEZ9
      Conserved Domains (4) summary
      pfam16366
      Location:424 → 479
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
      pfam16368
      Location:1 → 232
      CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus
      cd12723
      Location:234 → 336
      RRM1_CPEB1; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
      cd12725
      Location:347 → 430
      RRM2_CPEB1; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins

    4. XM_025391620.1 → XP_025247405.1  cytoplasmic polyadenylation element-binding protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8D2EEZ9
      Related
      ENSTGEP00000005355.1, ENSTGET00000006491.1
      Conserved Domains (4) summary
      cd12723
      Location:320 → 427
      RRM1_CPEB1; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
      cd12725
      Location:438 → 523
      RRM2_CPEB1; RNA recognition motif 2 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
      pfam16366
      Location:515 → 570
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
      pfam16368
      Location:12 → 318
      CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus

    5. XM_025391622.1 → XP_025247407.1  cytoplasmic polyadenylation element-binding protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8D2EEZ9
      Conserved Domains (4) summary
      pfam16366
      Location:429 → 484
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
      pfam16368
      Location:1 → 232
      CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus
      cd12723
      Location:234 → 341
      RRM1_CPEB1; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
      cd12725
      Location:352 → 435
      RRM2_CPEB1; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins

    6. XM_025391624.1 → XP_025247409.1  cytoplasmic polyadenylation element-binding protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A8D2EEZ9
      Related
      ENSTGEP00000005356.1, ENSTGET00000006492.1
      Conserved Domains (4) summary
      pfam16366
      Location:424 → 479
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
      pfam16368
      Location:1 → 232
      CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus
      cd12723
      Location:234 → 336
      RRM1_CPEB1; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
      cd12725
      Location:347 → 430
      RRM2_CPEB1; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins

    7. XM_025391625.1 → XP_025247410.1  cytoplasmic polyadenylation element-binding protein 1 isoform X6

      Conserved Domains (4) summary
      cd12723
      Location:83 → 185
      RRM1_CPEB1; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
      cd12725
      Location:196 → 281
      RRM2_CPEB1; RNA recognition motif 2 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
      pfam16366
      Location:273 → 328
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
      pfam16368
      Location:1 → 81
      CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus

    8. XM_025391627.1 → XP_025247412.1  40S ribosomal protein S17 isoform X8

      UniProtKB/TrEMBL
      A0A8D2EGD4, A0A8D2FLL0
      Conserved Domains (1) summary
      pfam00833
      Location:1 → 122
      Ribosomal_S17e; Ribosomal S17

    9. XM_025391626.1 → XP_025247411.1  40S ribosomal protein S17 isoform X7

      UniProtKB/TrEMBL
      A0A8D2EGD4, A0A8D2FLL0
      Related
      ENSTGEP00000005411.1, ENSTGET00000006555.1
      Conserved Domains (1) summary
      pfam00833
      Location:1 → 122
      Ribosomal_S17e; Ribosomal S17
    Nucleotide Protein
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