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    NUDX26 nudix hydrolase homolog 26 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820231, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NUDX26
    Official Full Name
    nudix hydrolase homolog 26
    Primary source
    TAIR:AT3G10620
    Locus tag
    AT3G10620
    See related
    Araport:AT3G10620
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATNUDX26; nudix hydrolase homolog 26
    Summary
    Encodes a ppGpp pyrophosphohydrolase.
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    Genomic context

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    See NUDX26 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (3320163..3321724)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene cationic amino acid transporter 7 Neighboring gene uncharacterized protein Neighboring gene Ribosomal S17 family protein Neighboring gene UDP-Glycosyltransferase superfamily protein Neighboring gene ncRNA Neighboring gene SNF7 family protein Neighboring gene nuclear pore complex protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Enzymatic and molecular characterization of Arabidopsis ppGpp pyrophosphohydrolase, AtNUDX26. Ito D, et al. Biosci Biotechnol Biochem, 2012. PMID 23221701
    2. Molecular characterization of organelle-type Nudix hydrolases in Arabidopsis. Ogawa T, et al. Plant Physiol, 2008 Nov. PMID 18815383, Free PMC Article
    3. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. molecular properties of ppGpp pyrophosphohydrolases in Arabidopsis
      Title: Enzymatic and molecular characterization of Arabidopsis ppGpp pyrophosphohydrolase, AtNUDX26.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_111898.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables bis(5'-adenosyl)-pentaphosphatase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within nucleoside phosphate metabolic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    nudix hydrolase homolog 26
    NP_187673.1
    • nudix hydrolase homolog 26 (NUDX26); CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase (InterPro:IPR020476), NUDIX hydrolase, conserved site (InterPro:IPR020084), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 27 (TAIR:AT5G06340.1); Has 4741 Blast hits to 4739 proteins in 1213 species: Archae - 2; Bacteria - 2928; Metazoa - 13; Fungi - 1; Plants - 97; Viruses - 0; Other Eukaryotes - 1700 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3320163..3321724
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111898.4 → NP_187673.1  nudix hydrolase homolog 26 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187673.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9CAF2, Q9LPN7
      UniProtKB/TrEMBL
      A0A178VJ84, A0A5S9XAW4
      Conserved Domains (1) summary
      cd03671
      Location:62 → 211
      Ap4A_hydrolase_plant_like; Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9CAF2.1

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