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    transcription elongation factor B polypeptide [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818878, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transcription elongation factor B polypeptide
    Primary source
    TAIR:AT2G42780
    Locus tag
    AT2G42780
    See related
    Araport:AT2G42780
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7D19.22; F7D19_22
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    9
    Sequence:
    Chromosome: 2; NC_003071.7 (17800312..17802816)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene DUF1685 family protein Neighboring gene Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein Neighboring gene citrate synthase 3 Neighboring gene ncRNA Neighboring gene receptor like protein 29

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001202807.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in transcription elongation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of elongin complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    transcription elongation factor B polypeptide
    NP_001189736.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684).
    NP_565984.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      17800312..17802816
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129839.4 → NP_565984.1  transcription elongation factor B polypeptide [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565984.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VSN4, A0A5S9X6Z6, Q93V71, Q9SJH8
      Conserved Domains (1) summary
      pfam06881
      Location:28 → 139
      Elongin_A; RNA polymerase II transcription factor SIII (Elongin) subunit A

    2. NM_001202807.1 → NP_001189736.1  transcription elongation factor B polypeptide [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189736.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X6Z6, F4IP79
      Conserved Domains (1) summary
      pfam06881
      Location:28 → 139
      Elongin_A; RNA polymerase II transcription factor SIII (Elongin) subunit A
    Nucleotide Protein
    Heading Accession and Version

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