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    LOC100825508 CSC1-like protein At4g02900 [ Brachypodium distachyon (stiff brome) ]

    Gene ID: 100825508, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC100825508
    Gene description
    CSC1-like protein At4g02900
    Locus tag
    BRADI_2g26180v3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brachypodium distachyon
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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    Genomic context

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    See LOC100825508 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 2 NC_016132.3 (24520191..24528170)
    102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 2 NC_016132.2 (24513436..24521315)

    Chromosome 2 - NC_016132.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112271098 Neighboring gene isoamylase 2, chloroplastic Neighboring gene pentatricopeptide repeat-containing protein At1g09900 Neighboring gene uncharacterized LOC112270975

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium-activated cation channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CSC1-like protein At4g02900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Genomic

    1. NC_016132.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

      Range
      24520191..24528170
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024458374.1 → XP_024314142.1  CSC1-like protein At4g02900

      UniProtKB/TrEMBL
      I1HJQ1
      Conserved Domains (3) summary
      pfam02714
      Location:371 → 642
      RSN1_7TM; Calcium-dependent channel, 7TM region, putative phosphate
      pfam13967
      Location:6 → 177
      RSN1_TM; Late exocytosis, associated with Golgi transport
      pfam14703
      Location:198 → 360
      PHM7_cyt; Cytosolic domain of 10TM putative phosphate transporter

    2. XM_003568458.4 → XP_003568506.1  CSC1-like protein At4g02900

      UniProtKB/TrEMBL
      I1HJQ1
      Conserved Domains (3) summary
      pfam02714
      Location:371 → 642
      RSN1_7TM; Calcium-dependent channel, 7TM region, putative phosphate
      pfam13967
      Location:6 → 177
      RSN1_TM; Late exocytosis, associated with Golgi transport
      pfam14703
      Location:198 → 360
      PHM7_cyt; Cytosolic domain of 10TM putative phosphate transporter
    Nucleotide Protein Strain
    Heading Accession and Version

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