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    LOC100823355 pheophytinase, chloroplastic [ Brachypodium distachyon (stiff brome) ]

    Gene ID: 100823355, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC100823355
    Gene description
    pheophytinase, chloroplastic
    Locus tag
    BRADI_1g35780v3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brachypodium distachyon
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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    Genomic context

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    See LOC100823355 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 1 NC_016131.3 (31494661..31498403, complement)
    102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 1 NC_016131.2 (31495389..31499139, complement)

    Chromosome 1 - NC_016131.3Genomic Context describing neighboring genes Neighboring gene transfer RNA leucine (anticodon CAG) Neighboring gene RNA-binding protein 24-A Neighboring gene brefeldin A-inhibited guanine nucleotide-exchange protein 1 Neighboring gene bZIP transcription factor 50 Neighboring gene N66 matrix protein-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables pheophytinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chlorophyll catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pheophytinase, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Genomic

    1. NC_016131.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

      Range
      31494661..31498403 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003563557.3 → XP_003563605.1  pheophytinase, chloroplastic isoform X1

      UniProtKB/TrEMBL
      I1GX81
      Conserved Domains (2) summary
      PLN02824
      Location:157 → 472
      PLN02824; hydrolase, alpha/beta fold family protein
      pfam12695
      Location:185 → 313
      Abhydrolase_5; Alpha/beta hydrolase family

    2. XM_010229192.3 → XP_010227494.1  pheophytinase, chloroplastic isoform X2

      See identical proteins and their annotated locations for XP_010227494.1

      UniProtKB/TrEMBL
      I1GX82
      Conserved Domains (2) summary
      PLN02824
      Location:101 → 416
      PLN02824; hydrolase, alpha/beta fold family protein
      pfam12695
      Location:129 → 257
      Abhydrolase_5; Alpha/beta hydrolase family

    3. XM_010229191.3 → XP_010227493.1  pheophytinase, chloroplastic isoform X2

      See identical proteins and their annotated locations for XP_010227493.1

      UniProtKB/TrEMBL
      I1GX82
      Conserved Domains (2) summary
      PLN02824
      Location:101 → 416
      PLN02824; hydrolase, alpha/beta fold family protein
      pfam12695
      Location:129 → 257
      Abhydrolase_5; Alpha/beta hydrolase family
    Nucleotide Protein Strain
    Heading Accession and Version

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