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    LOC100832887 UPF0235 protein At5g63440 [ Brachypodium distachyon (stiff brome) ]

    Gene ID: 100832887, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC100832887
    Gene description
    UPF0235 protein At5g63440
    Locus tag
    BRADI_1g52700v3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brachypodium distachyon
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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    Genomic context

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    See LOC100832887 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 1 NC_016131.3 (51183046..51187474, complement)
    102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 1 NC_016131.2 (51255849..51260266, complement)

    Chromosome 1 - NC_016131.3Genomic Context describing neighboring genes Neighboring gene synaptotagmin-5 Neighboring gene microRNA MIR5185l Neighboring gene endoplasmic reticulum metallopeptidase 1 Neighboring gene translation initiation factor IF-2-like Neighboring gene retrovirus-related Pol polyprotein from transposon TNT 1-94 Neighboring gene sphinganine C4-monooxygenase 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale collection and analysis of full-length cDNAs from Brachypodium distachyon and integration with Pooideae sequence resources. Mochida K, et al. PLoS One, 2013. PMID 24130698, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    UPF0235 protein At5g63440

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Genomic

    1. NC_016131.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

      Range
      51183046..51187474 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024457176.1 → XP_024312944.1  UPF0235 protein At5g63440 isoform X2

      UniProtKB/TrEMBL
      A0A2K2DR48
      Conserved Domains (1) summary
      pfam02594
      Location:100 → 171
      DUF167; Uncharacterized ACR, YggU family COG1872

    2. XM_003557262.4 → XP_003557310.1  UPF0235 protein At5g63440 isoform X1

      UniProtKB/TrEMBL
      A0A0Q3LAJ2, I1H285
      Conserved Domains (1) summary
      pfam02594
      Location:146 → 214
      DUF167; uncharacterized ACR, YggU family COG1872
    Nucleotide Protein Strain
    Heading Accession and Version

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