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    LOC100826321 protein TSS [ Brachypodium distachyon (stiff brome) ]

    Gene ID: 100826321, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC100826321
    Gene description
    protein TSS
    Locus tag
    BRADI_1g29090v3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brachypodium distachyon
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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    Genomic context

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    See LOC100826321 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 1 NC_016131.3 (24638679..24657518, complement)
    102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 1 NC_016131.2 (24639387..24658237, complement)

    Chromosome 1 - NC_016131.3Genomic Context describing neighboring genes Neighboring gene CASP-like protein 1D1 Neighboring gene serine/threonine-protein kinase 19 Neighboring gene uncharacterized LOC106865828 Neighboring gene WAT1-related protein At1g09380 Neighboring gene uncharacterized LOC104584955

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in organelle organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein TSS
    Names
    clustered mitochondria protein homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Genomic

    1. NC_016131.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

      Range
      24638679..24657518 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003563154.4 → XP_003563202.1  protein TSS isoform X2

      UniProtKB/TrEMBL
      A0A0Q3H0D3
      Conserved Domains (7) summary
      cd15466
      Location:739 → 880
      CLU-central; An uncharacterized central domain of CLU mitochondrial proteins
      sd00006
      Location:952 → 978
      TPR; TPR repeat [structural motif]
      pfam03957
      Location:1624 → 1723
      Jun; Jun-like transcription factor
      pfam13236
      Location:349 → 397
      CLU; Clustered mitochondria
      pfam13374
      Location:949 → 990
      TPR_10; Tetratricopeptide repeat
      pfam13424
      Location:946 → 1019
      TPR_12; Tetratricopeptide repeat
      pfam15044
      Location:44 → 115
      CLU_N; Mitochondrial function, CLU-N-term

    2. XM_024456721.1 → XP_024312489.1  protein TSS isoform X1

      Conserved Domains (5) summary
      cd15466
      Location:739 → 880
      CLU-central; An uncharacterized central domain of CLU mitochondrial proteins
      sd00006
      Location:952 → 978
      TPR; TPR repeat [structural motif]
      pfam13424
      Location:1050 → 1125
      TPR_12; Tetratricopeptide repeat
      pfam15044
      Location:44 → 115
      CLU_N; Mitochondrial function, CLU-N-term
      cl26464
      Location:1493 → 1788
      Atrophin-1; Atrophin-1 family
    Nucleotide Protein Strain
    Heading Accession and Version

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