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    LOC106174611 protein vav [ Lingula anatina ]

    Gene ID: 106174611, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC106174611
    Gene description
    protein vav
    See related
    EnsemblRapid:LOC106174611
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lingula anatina
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Brachiopoda; Linguliformea; Lingulata; Lingulida; Linguloidea; Lingulidae; Lingula
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    Genomic context

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    See LOC106174611 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    101 current LinAna2.0 (GCF_001039355.2) Unplaced Scaffold NW_019775747.1 (454353..486861)
    100 previous assembly LinAna1.0 (GCF_001039355.1) Unplaced Scaffold NW_013580487.1 (42356..74861)

    NW_019775747.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106168345 Neighboring gene uncharacterized LOC112042664 Neighboring gene LIM/homeobox protein Awh Neighboring gene TBC1 domain family member 13-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Lingula genome provides insights into brachiopod evolution and the origin of phosphate biomineralization. Luo YJ, et al. Nat Commun, 2015 Sep 18. PMID 26383154, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables guanyl-nucleotide exchange factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein vav; proto-oncogene vav

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lingula anatina Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference LinAna2.0 Primary Assembly

    Genomic

    1. NW_019775747.1 Reference LinAna2.0 Primary Assembly

      Range
      454353..486861
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013556247.2 → XP_013411701.1  proto-oncogene vav isoform X2

      UniProtKB/TrEMBL
      A0A1S3JNI9
      Related
      XP_013411701.1, XM_013556247.2
      Conserved Domains (7) summary
      cd01223
      Location:429 → 560
      PH_Vav; Vav pleckstrin homology (PH) domain
      pfam00130
      Location:568 → 618
      C1_1; Phorbol esters/diacylglycerol binding domain (C1 domain)
      pfam00169
      Location:447 → 555
      PH; PH domain
      pfam00307
      Location:6 → 118
      CH; Calponin homology (CH) domain
      pfam00621
      Location:237 → 412
      RhoGEF; RhoGEF domain
      cl15255
      Location:779 → 878
      SH2; Src homology 2 (SH2) domain
      cl17036
      Location:899 → 955
      SH3; Src Homology 3 domain superfamily

    2. XM_013556246.2 → XP_013411700.1  proto-oncogene vav isoform X1

      UniProtKB/TrEMBL
      A0A1S3JMU4
      Related
      XP_013411700.1, XM_013556246.2
      Conserved Domains (7) summary
      cd01223
      Location:429 → 560
      PH_Vav; Vav pleckstrin homology (PH) domain
      pfam00130
      Location:568 → 618
      C1_1; Phorbol esters/diacylglycerol binding domain (C1 domain)
      pfam00169
      Location:447 → 555
      PH; PH domain
      pfam00307
      Location:6 → 118
      CH; Calponin homology (CH) domain
      pfam00621
      Location:237 → 412
      RhoGEF; RhoGEF domain
      cl15255
      Location:779 → 881
      SH2; Src homology 2 (SH2) domain
      cl17036
      Location:902 → 958
      SH3; Src Homology 3 domain superfamily

    3. XM_013556250.2 → XP_013411704.1  proto-oncogene vav isoform X5

      UniProtKB/TrEMBL
      A0A1S3JNY3
      Related
      XP_013411704.1, XM_013556250.2
      Conserved Domains (7) summary
      cd01223
      Location:405 → 536
      PH_Vav; Vav pleckstrin homology (PH) domain
      pfam00130
      Location:544 → 594
      C1_1; Phorbol esters/diacylglycerol binding domain (C1 domain)
      pfam00169
      Location:423 → 531
      PH; PH domain
      pfam00307
      Location:6 → 118
      CH; Calponin homology (CH) domain
      pfam00621
      Location:213 → 388
      RhoGEF; RhoGEF domain
      cl15255
      Location:755 → 857
      SH2; Src homology 2 (SH2) domain
      cl17036
      Location:878 → 934
      SH3; Src Homology 3 domain superfamily

    4. XM_013556248.2 → XP_013411702.1  protein vav isoform X3

      UniProtKB/TrEMBL
      A0A1S3JMX1
      Related
      XP_013411702.1, XM_013556248.2
      Conserved Domains (7) summary
      cd01223
      Location:429 → 560
      PH_Vav; Vav pleckstrin homology (PH) domain
      pfam00130
      Location:568 → 618
      C1_1; Phorbol esters/diacylglycerol binding domain (C1 domain)
      pfam00169
      Location:447 → 555
      PH; PH domain
      pfam00307
      Location:6 → 118
      CH; Calponin homology (CH) domain
      pfam00621
      Location:237 → 412
      RhoGEF; RhoGEF domain
      cl15255
      Location:779 → 881
      SH2; Src homology 2 (SH2) domain
      cl17036
      Location:898 → 954
      SH3; Src Homology 3 domain superfamily

    5. XM_013556249.2 → XP_013411703.1  proto-oncogene vav isoform X4

      UniProtKB/TrEMBL
      A0A1S3JMU6
      Related
      XP_013411703.1, XM_013556249.2
      Conserved Domains (7) summary
      cd01223
      Location:429 → 553
      PH_Vav; Vav pleckstrin homology (PH) domain
      pfam00130
      Location:561 → 611
      C1_1; Phorbol esters/diacylglycerol binding domain (C1 domain)
      pfam00169
      Location:447 → 548
      PH; PH domain
      pfam00307
      Location:6 → 118
      CH; Calponin homology (CH) domain
      pfam00621
      Location:237 → 412
      RhoGEF; RhoGEF domain
      cl15255
      Location:772 → 874
      SH2; Src homology 2 (SH2) domain
      cl17036
      Location:895 → 951
      SH3; Src Homology 3 domain superfamily

    6. XM_013556251.2 → XP_013411705.1  proto-oncogene vav isoform X6

      UniProtKB/TrEMBL
      A0A1S3JMV3
      Related
      XP_013411705.1, XM_013556251.2
      Conserved Domains (7) summary
      cd01223
      Location:403 → 534
      PH_Vav; Vav pleckstrin homology (PH) domain
      pfam00130
      Location:542 → 592
      C1_1; Phorbol esters/diacylglycerol binding domain (C1 domain)
      pfam00169
      Location:421 → 529
      PH; PH domain
      pfam00307
      Location:6 → 118
      CH; Calponin homology (CH) domain
      pfam00621
      Location:211 → 386
      RhoGEF; RhoGEF domain
      cl15255
      Location:753 → 855
      SH2; Src homology 2 (SH2) domain
      cl17036
      Location:876 → 932
      SH3; Src Homology 3 domain superfamily
    Nucleotide Protein
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