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    id2b inhibitor of DNA binding 2b [ Seriola lalandi dorsalis ]

    Gene ID: 111645214, updated on 15-Mar-2024

    Summary

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    Gene symbol
    id2b
    Gene description
    inhibitor of DNA binding 2b
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Seriola lalandi dorsalis (sub-species: dorsalis)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
    Orthologs
    zebrafish all
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    Genomic context

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    See id2b in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current Sedor1 (GCF_002814215.1) Unplaced Scaffold NW_019525498.1 (1451321..1454165)

    NW_019525498.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111645185 Neighboring gene uncharacterized LOC111645218 Neighboring gene kinase D-interacting substrate 220b Neighboring gene uncharacterized LOC111645197 Neighboring gene membrane bound O-acyltransferase domain containing 2b

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019525498 Unplaced Scaffold Reference Sedor1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in circadian regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA-binding protein inhibitor ID-3-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Seriola lalandi dorsalis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sedor1 Primary Assembly

    Genomic

    1. NW_019525498.1 Reference Sedor1 Primary Assembly

      Range
      1451321..1454165
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023394311.1 → XP_023250079.1  DNA-binding protein inhibitor ID-3-like

      UniProtKB/TrEMBL
      A0A3B4YDJ8
      Conserved Domains (1) summary
      cd00083
      Location:31 → 73
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    Nucleotide Protein
    Heading Accession and Version

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