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    Tceal9 transcription elongation factor A like 9 [ Mus musculus (house mouse) ]

    Gene ID: 22381, updated on 9-Dec-2024

    Summary

    Official Symbol
    Tceal9provided by MGI
    Official Full Name
    transcription elongation factor A like 9provided by MGI
    Primary source
    MGI:MGI:109567
    See related
    Ensembl:ENSMUSG00000042712 AllianceGenome:MGI:109567
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Wbp5
    Summary
    Predicted to be located in nucleus. Is expressed in several structures, including gut; liver; remnant of Rathke's pouch; sensory organ; and trigeminal ganglion. Orthologous to human TCEAL9 (transcription elongation factor A like 9). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in placenta adult (RPKM 194.5), CNS E11.5 (RPKM 130.6) and 12 other tissues See more
    Orthologs
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    Genomic context

    See Tceal9 in Genome Data Viewer
    Location:
    X F1; X 57.53 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (135145829..135147888)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (136245080..136247139)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene transcription elongation factor A (SII)-like 7 Neighboring gene predicted gene, 39535 Neighboring gene brain expressed X-linked 3 Neighboring gene nuclear encoded rRNA 5S 12

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    General protein information

    Preferred Names
    transcription elongation factor A protein-like 9
    Names
    TCEA-like protein 9
    WBP-5
    WW domain binding protein 5
    schlafen 8-interacting protein
    transcription elongation factor S-II protein-like 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_011712.2NP_035842.1  transcription elongation factor A protein-like 9

      See identical proteins and their annotated locations for NP_035842.1

      Status: VALIDATED

      Source sequence(s)
      AL671493, BU511227
      Consensus CDS
      CCDS30418.1
      UniProtKB/Swiss-Prot
      A3KG99, O08549, Q9DD24
      Related
      ENSMUSP00000047474.5, ENSMUST00000048687.11
      Conserved Domains (1) summary
      pfam04538
      Location:44102
      BEX; Brain expressed X-linked like family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      135145829..135147888
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)