U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    CASTOR1 cytosolic arginine sensor for mTORC1 subunit 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 506974, updated on 30-Jan-2025

    Summary

    Go to the top of the page Help
    Official Symbol
    CASTOR1provided by VGNC
    Official Full Name
    cytosolic arginine sensor for mTORC1 subunit 1provided by VGNC
    Primary source
    VGNC:VGNC:26791
    See related
    BGD:BT16504; EnsemblRapid:ENSBTAG00070022765
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    GATSL3
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CASTOR1 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 17 NC_037344.1 (69300856..69305382, complement)

    Chromosome 17 - NC_037344.1Genomic Context describing neighboring genes Neighboring gene LIF interleukin 6 family cytokine Neighboring gene oncostatin M Neighboring gene TBC1 domain family member 10A Neighboring gene splicing factor 3a subunit 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037344.1 Chromosome 17 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables arginine binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of TORC1 signaling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    cytosolic arginine sensor for mTORC1 subunit 1
    Names
    GATS protein like 3
    GATS-like protein 3

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081514.1 → NP_001074983.1  cytosolic arginine sensor for mTORC1 subunit 1

      See identical proteins and their annotated locations for NP_001074983.1

      Status: PROVISIONAL

      Source sequence(s)
      BT026316
      UniProtKB/Swiss-Prot
      Q0V8A3
      UniProtKB/TrEMBL
      A0AAA9T9I7
      Related
      ENSBTAP00070030649.1, ENSBTAT00070051262.1
      Conserved Domains (1) summary
      pfam13840
      Location:261 → 322
      ACT_7; ACT domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037344.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      69300856..69305382 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005218047.5 → XP_005218104.1  cytosolic arginine sensor for mTORC1 subunit 1 isoform X1

      UniProtKB/TrEMBL
      A0AAA9T9I7, A0AAF6Z4R4
      Related
      ENSBTAP00070030670.1, ENSBTAT00070051283.1
      Conserved Domains (1) summary
      pfam13840
      Location:262 → 323
      ACT_7; ACT domain
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0V8A3.1 GenPept UniProtKB/Swiss-Prot:Q0V8A3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.