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    ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829862, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547)
    Primary source
    TAIR:AT4G37080
    Locus tag
    AT4G37080
    See related
    Araport:AT4G37080
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AP22.58; AP22_58
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    10
    Sequence:
    Chromosome: 4; NC_003075.7 (17472980..17476979)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene PATATIN-like protein 5 Neighboring gene Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein Neighboring gene UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001204014.2
    NM_119871.3
    NM_202969.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547)
    NP_001190943.1
    • Protein of unknown function, DUF547; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT5G42690.2).
    NP_195425.2
    • Protein of unknown function, DUF547; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT5G42690.2); Has 1854 Blast hits to 1696 proteins in 329 species: Archae - 6; Bacteria - 397; Metazoa - 313; Fungi - 62; Plants - 588; Viruses - 2; Other Eukaryotes - 486 (source: NCBI BLink).
    NP_974698.1
    • Protein of unknown function, DUF547; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT5G42690.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      17472980..17476979
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342429.1 → NP_001328848.1  ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B5X2, A0A5S9Y008, A0A654FW82

    2. NM_001204014.2 → NP_001190943.1  ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190943.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y008, A0A654FW82, A0A7G2F3I0, F4JR96
      Conserved Domains (2) summary
      pfam04784
      Location:406 → 531
      DUF547; Protein of unknown function, DUF547
      pfam14389
      Location:51 → 115
      Lzipper-MIP1; Leucine-zipper of ternary complex factor MIP1

    3. NM_202969.1 → NP_974698.1  ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974698.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y008, A0A654FW82, A0A7G2F3I0, F4JR96
      Conserved Domains (2) summary
      pfam04784
      Location:406 → 531
      DUF547; Protein of unknown function, DUF547
      pfam14389
      Location:51 → 115
      Lzipper-MIP1; Leucine-zipper of ternary complex factor MIP1

    4. NM_119871.3 → NP_195425.2  ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195425.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V4V6, O23178, Q8RY64
      Conserved Domains (2) summary
      pfam04784
      Location:388 → 518
      DUF547; Protein of unknown function, DUF547
      pfam14389
      Location:39 → 102
      Lzipper-MIP1; Leucine-zipper of ternary complex factor MIP1
    Nucleotide Protein
    Heading Accession and Version

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