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    Pyridoxal-dependent decarboxylase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820660, updated on 18-Sep-2024

    Summary

    Official Full Name
    Pyridoxal-dependent decarboxylase family protein
    Primary source
    TAIR:AT3G14390
    Locus tag
    AT3G14390
    See related
    Araport:AT3G14390
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

    Location:
    chromosome: 3
    Exon count:
    8
    Sequence:
    Chromosome: 3; NC_003074.8 (4806670..4809433)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein family (UPF0497) Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ubiquitin-specific protease 25

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    Pyridoxal-dependent decarboxylase family protein
    NP_188056.1
    • Pyridoxal-dependent decarboxylase family protein; FUNCTIONS IN: diaminopimelate decarboxylase activity; INVOLVED IN: lysine biosynthetic process via diaminopimelate; LOCATED IN: chloroplast; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Alanine racemase/group IV decarboxylase, C-terminal (InterPro:IPR009006), Ornithine/DAP/Arg decarboxylase (InterPro:IPR000183), Orn/DAP/Arg decarboxylase 2, N-terminal (InterPro:IPR022644), Orn/DAP/Arg decarboxylase 2, C-terminal (InterPro:IPR022643), Diaminopimelate decarboxylase (InterPro:IPR002986), Orn/DAP/Arg decarboxylase 2, conserved site (InterPro:IPR022657), Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site (InterPro:IPR022653); BEST Arabidopsis thaliana protein match is: Pyridoxal-dependent decarboxylase family protein (TAIR:AT5G11880.1); Has 13020 Blast hits to 12980 proteins in 2586 species: Archae - 150; Bacteria - 7800; Metazoa - 435; Fungi - 194; Plants - 400; Viruses - 27; Other Eukaryotes - 4014 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4806670..4809433
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112297.3NP_188056.1  Pyridoxal-dependent decarboxylase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188056.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q949X7, Q9LUL0
      UniProtKB/TrEMBL
      A0A178VFS4, A0A5S9XC27, A0A7G2EPZ4
      Conserved Domains (1) summary
      PLN02537
      Location:75484
      PLN02537; diaminopimelate decarboxylase