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    RHA1B RING-H2 finger A1B [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826738, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RHA1B
    Official Full Name
    RING-H2 finger A1B
    Primary source
    TAIR:AT4G11360
    Locus tag
    AT4G11360
    See related
    Araport:AT4G11360
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F8L21.150; F8L21_150; RING-H2 finger A1B; RING-H2 FINGER PROTEIN RHA1B
    Summary
    Encodes a putative RING-H2 finger protein RHA1b.
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    Genomic context

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    See RHA1B in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Sequence:
    Chromosome: 4; NC_003075.7 (6905848..6906856)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene transferring glycosyl group transferase (DUF604) Neighboring gene tRNA-Ala Neighboring gene RING-H2 finger A1A Neighboring gene Serine/Threonine kinase catalytic domain protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional analysis of the RING-type ubiquitin ligase family of Arabidopsis. Stone SL, et al. Plant Physiol, 2005 Jan. PMID 15644464, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_117207.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    RING-H2 finger A1B
    NP_192875.1
    • RING-H2 finger A1B (RHA1B); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to cadmium ion, response to chitin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING-H2 finger A1A (TAIR:AT4G11370.1); Has 7546 Blast hits to 7528 proteins in 261 species: Archae - 0; Bacteria - 0; Metazoa - 1890; Fungi - 589; Plants - 4122; Viruses - 19; Other Eukaryotes - 926 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      6905848..6906856
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117207.3 → NP_192875.1  RING-H2 finger A1B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192875.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q4TU17, Q9SUS5, Q9ZT51
      UniProtKB/TrEMBL
      A0A178V1Z4, A0A5S9XS30, A0A654FN74
      Conserved Domains (2) summary
      cd00162
      Location:85 → 128
      RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
      cl17238
      Location:85 → 129
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SUS5.1

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