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    RUS6 root UVB sensitive protein (Protein of unknown function, DUF647) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835045, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RUS6
    Official Full Name
    root UVB sensitive protein (Protein of unknown function, DUF647)
    Primary source
    TAIR:AT5G49820
    Locus tag
    AT5G49820
    See related
    Araport:AT5G49820
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    EMBRYO DEFECTIVE 1879; K21G20.3; K21G20_3; ROOT UV-B SENSITIVE 6
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    Genomic context

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    See RUS6 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    13
    Sequence:
    Chromosome: 5; NC_003076.8 (20246391..20249622, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Polyketide cyclase/dehydrase and lipid transport superfamily protein Neighboring gene methionine S-methyltransferase Neighboring gene exocyst complex component 84B Neighboring gene ATP-dependent Clp protease Neighboring gene Mannose-binding lectin superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RUS6, a DUF647-containing protein, is essential for early embryonic development in Arabidopsis thaliana. Perry N, et al. BMC Plant Biol, 2021 May 25. PMID 34034658, Free PMC Article
    2. ROOT UV-B SENSITIVE2 acts with ROOT UV-B SENSITIVE1 in a root ultraviolet B-sensing pathway. Leasure CD, et al. Plant Physiol, 2009 Aug. PMID 19515790, Free PMC Article
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. RUS6, a DUF647-containing protein, is essential for early embryonic development in Arabidopsis thaliana.
      Title: RUS6, a DUF647-containing protein, is essential for early embryonic development in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_124360.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy NAS
    Non-traceable Author Statement
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    root UVB sensitive protein (Protein of unknown function, DUF647)
    NP_568713.1
    • CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF647 (InterPro:IPR006968); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF647 (TAIR:AT2G31190.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      20246391..20249622 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124360.4 → NP_568713.1  root UVB sensitive protein (Protein of unknown function, DUF647) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568713.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93YU2, Q9LTB1
      UniProtKB/TrEMBL
      A0A178U6M3, A0A5S9YCQ4
      Conserved Domains (1) summary
      pfam04884
      Location:104 → 333
      DUF647; Vitamin B6 photo-protection and homoeostasis
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93YU2.1

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