U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    FAP2 Chalcone-flavanone isomerase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817171, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    FAP2
    Official Full Name
    Chalcone-flavanone isomerase family protein
    Primary source
    TAIR:AT2G26310
    Locus tag
    AT2G26310
    See related
    Araport:AT2G26310
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtFAP2; fatty-acid-binding protein 2; T1D16.5; T1D16_5
    Summary
    Encodes a plastid stroma localized fatty acid binding protein.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See FAP2 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    11
    Sequence:
    Chromosome: 2; NC_003071.7 (11201303..11204170)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene root-specific kinase 1 Neighboring gene G protein alpha subunit 1 Neighboring gene AGAMOUS-like 33 Neighboring gene Leucine-rich receptor-like protein kinase family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Evolution of the chalcone-isomerase fold from fatty-acid binding to stereospecific catalysis. Ngaki MN, et al. Nature, 2012 May 13. PMID 22622584, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    NM_001202677.1
    NM_001336056.1
    NM_001336057.1
    NM_001336058.1
    NM_128188.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables fatty acid binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables fatty acid binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables intramolecular lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast stroma IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    Chalcone-flavanone isomerase family protein
    NP_001189606.1
    • Chalcone-flavanone isomerase family protein; FUNCTIONS IN: intramolecular lyase activity; INVOLVED IN: cellular amino acid derivative biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Chalcone isomerase, subgroup (InterPro:IPR003466), Chalcone isomerase (InterPro:IPR016087); BEST Arabidopsis thaliana protein match is: Chalcone-flavanone isomerase family protein (TAIR:AT3G63170.1).
    NP_001318291.1
    • Chalcone-flavanone isomerase family protein; FUNCTIONS IN: intramolecular lyase activity; INVOLVED IN: cellular amino acid derivative biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Chalcone isomerase, subgroup (InterPro:IPR003466), Chalcone isomerase (InterPro:IPR016087); BEST Arabidopsis thaliana protein match is: Chalcone-flavanone isomerase family protein (TAIR:AT3G63170.1).
    NP_180199.3
    • Chalcone-flavanone isomerase family protein; FUNCTIONS IN: intramolecular lyase activity; INVOLVED IN: cellular amino acid derivative biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Chalcone isomerase, subgroup (InterPro:IPR003466), Chalcone isomerase (InterPro:IPR016087); BEST Arabidopsis thaliana protein match is: Chalcone-flavanone isomerase family protein (TAIR:AT3G63170.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      11201303..11204170
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128188.5 → NP_180199.3  Chalcone-flavanone isomerase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180199.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IUI5, O64841, Q58G09, Q84RK2, Q84RK3, Q8GXU6
      UniProtKB/TrEMBL
      A0A178VYJ7, A0A5S9X1M7, A0A654EXG9, A0A7G2EB88
      Conserved Domains (1) summary
      PLN03175
      Location:2 → 398
      PLN03175; hypothetical protein; Provisional

    2. NM_001202677.1 → NP_001189606.1  Chalcone-flavanone isomerase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189606.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EXG9, A0A7G2EB88
      Conserved Domains (1) summary
      cl03589
      Location:2 → 373
      Chalcone_3; Chalcone isomerase-like

    3. NM_001336056.1 → NP_001318291.1  Chalcone-flavanone isomerase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2H1ZE28, A0A654EXG9, A0A7G2EB88
      Conserved Domains (1) summary
      cl03589
      Location:2 → 366
      Chalcone_3; Chalcone isomerase-like

    4. NM_001336057.1 → NP_001324881.1  Chalcone-flavanone isomerase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B1G4, A0A654EXG9, A0A7G2EB88
      Conserved Domains (1) summary
      cl03589
      Location:2 → 351
      Chalcone_3; Chalcone isomerase-like

    5. NM_001336058.1 → NP_001324880.1  Chalcone-flavanone isomerase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IUI5, O64841, Q58G09, Q84RK2, Q84RK3, Q8GXU6
      UniProtKB/TrEMBL
      A0A178VYJ7, A0A5S9X1M7, A0A654EXG9, A0A7G2EB88
      Conserved Domains (1) summary
      PLN03175
      Location:2 → 398
      PLN03175; hypothetical protein; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84RK2.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools