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    UBP9 ubiquitin-specific protease 9 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826649, updated on 18-Sep-2024

    Summary

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    Official Symbol
    UBP9
    Official Full Name
    ubiquitin-specific protease 9
    Primary source
    TAIR:AT4G10570
    Locus tag
    AT4G10570
    See related
    Araport:AT4G10570
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T4F9.30; T4F9_30; ubiquitin-specific protease 9
    Summary
    encodes a ubiquitin-specific protease family member, UBP9.
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    Genomic context

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    See UBP9 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    13
    Sequence:
    Chromosome: 4; NC_003075.7 (6523225..6528330, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Subtilase family protein Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene pseudo Neighboring gene ubiquitin-specific protease 10

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Lipid-mediated activation of plasma membrane-localized deubiquitylating enzymes modulate endosomal trafficking. Vogel K, et al. Nat Commun, 2022 Nov 12. PMID 36371501, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_117125.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ubiquitin-specific protease 9
    NP_192795.3
    • ubiquitin-specific protease 9 (UBP9); FUNCTIONS IN: cysteine-type endopeptidase activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin-specific peptidase, DUSP domain (InterPro:IPR006615), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 10 (TAIR:AT4G10590.1); Has 11569 Blast hits to 7616 proteins in 265 species: Archae - 0; Bacteria - 6; Metazoa - 6024; Fungi - 1995; Plants - 1380; Viruses - 8; Other Eukaryotes - 2156 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      6523225..6528330 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117125.4 → NP_192795.3  ubiquitin-specific protease 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192795.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9T0B6, Q9ZSB5
      UniProtKB/TrEMBL
      A0A654FMW7
      Conserved Domains (5) summary
      smart00695
      Location:38 → 137
      DUSP; Domain in ubiquitin-specific proteases
      COG5560
      Location:17 → 894
      UBP12; Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
      cd02674
      Location:740 → 893
      Peptidase_C19R; A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      cl02553
      Location:304 → 480
      Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
      pfam14533
      Location:505 → 566
      USP7_C2; Ubiquitin-specific protease C-terminal
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZSB5.2

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