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    LOC111099222 chitinase domain-containing protein 1-like [ Crassostrea virginica (eastern oyster) ]

    Gene ID: 111099222, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC111099222
    Gene description
    chitinase domain-containing protein 1-like
    See related
    EnsemblRapid:LOC111099222
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Crassostrea virginica
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Crassostrea
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    Genomic context

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    See LOC111099222 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    100 current C_virginica-3.0 (GCF_002022765.2) 5 NC_035784.1 (93454063..93465046, complement)

    Chromosome 5 - NC_035784.1Genomic Context describing neighboring genes Neighboring gene inositol 1,4,5-trisphosphate receptor type 3-like Neighboring gene uncharacterized LOC111136795 Neighboring gene ADAM 17-like protease Neighboring gene ankyrin repeat, PH and SEC7 domain containing protein secG-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_035784.1 Chromosome 5 Reference C_virginica-3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oligosaccharide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chitinase domain-containing protein 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Crassostrea virginica Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference C_virginica-3.0 Primary Assembly

    Genomic

    1. NC_035784.1 Reference C_virginica-3.0 Primary Assembly

      Range
      93454063..93465046 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022430659.1 → XP_022286367.1  chitinase domain-containing protein 1-like isoform X2

      UniProtKB/TrEMBL
      A0A8B8A5C5
      Related
      XP_022286367.1, XM_022430659.1
      Conserved Domains (1) summary
      cd02876
      Location:73 → 386
      GH18_SI-CLP; Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl ...

    2. XM_022430660.1 → XP_022286368.1  chitinase domain-containing protein 1-like isoform X2

      UniProtKB/TrEMBL
      A0A8B8A5C5
      Related
      XP_022286368.1, XM_022430660.1
      Conserved Domains (1) summary
      cd02876
      Location:73 → 386
      GH18_SI-CLP; Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl ...

    3. XM_022430662.1 → XP_022286370.1  chitinase domain-containing protein 1-like isoform X2

      UniProtKB/TrEMBL
      A0A8B8A5C5
      Related
      XP_022286370.1, XM_022430662.1
      Conserved Domains (1) summary
      cd02876
      Location:73 → 386
      GH18_SI-CLP; Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl ...

    4. XM_022430656.1 → XP_022286364.1  chitinase domain-containing protein 1-like isoform X1

      UniProtKB/TrEMBL
      A0A8B8A922
      Related
      XP_022286364.1, XM_022430656.1
      Conserved Domains (1) summary
      cd02876
      Location:76 → 389
      GH18_SI-CLP; Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl ...

    5. XM_022430657.1 → XP_022286365.1  chitinase domain-containing protein 1-like isoform X2

      UniProtKB/TrEMBL
      A0A8B8A5C5
      Related
      XP_022286365.1, XM_022430657.1
      Conserved Domains (1) summary
      cd02876
      Location:73 → 386
      GH18_SI-CLP; Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl ...

    6. XM_022430661.1 → XP_022286369.1  chitinase domain-containing protein 1-like isoform X2

      UniProtKB/TrEMBL
      A0A8B8A5C5
      Related
      XP_022286369.1, XM_022430661.1
      Conserved Domains (1) summary
      cd02876
      Location:73 → 386
      GH18_SI-CLP; Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl ...
    Nucleotide Protein
    Heading Accession and Version

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