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    Spf45 splicing factor 45 [ Zootermopsis nevadensis ]

    Gene ID: 110826847, updated on 24-May-2024

    Summary

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    Gene symbol
    Spf45
    Gene description
    splicing factor 45
    Locus tag
    L798_02273
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Zootermopsis nevadensis
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Polyneoptera; Dictyoptera; Blattodea; Blattoidea; Termitoidae; Termopsidae; Zootermopsis
    Orthologs
    fruit fly all
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    Genomic context

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    See Spf45 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current ZooNev1.0 (GCF_000696155.1) Unplaced Scaffold NW_019059654.1 (171966..183023, complement)

    NW_019059654.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110826826 Neighboring gene GILT-like protein 1 Neighboring gene uncharacterized LOC110826852 Neighboring gene A disintegrin and metalloproteinase with thrombospondin motifs adt-2-like Neighboring gene Limb expression 1 family member lowfat

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019059654 Unplaced Scaffold Reference ZooNev1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in alternative mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mRNA cis splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    splicing factor 45

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Zootermopsis nevadensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ZooNev1.0 Primary Assembly

    Genomic

    1. NW_019059654.1 Reference ZooNev1.0 Primary Assembly

      Range
      171966..183023 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022057901.1 → XP_021913593.1  splicing factor 45

      UniProtKB/TrEMBL
      A0A067RPB4
      Conserved Domains (2) summary
      cd12647
      Location:300 → 395
      RRM_UHM_SPF45; RNA recognition motif in UHM domain of 45 kDa-splicing factor (SPF45) and similar proteins
      cl25887
      Location:178 → 395
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

    2. XM_022057902.1 → XP_021913594.1  splicing factor 45

      UniProtKB/TrEMBL
      A0A067RPB4
      Conserved Domains (2) summary
      cd12647
      Location:300 → 395
      RRM_UHM_SPF45; RNA recognition motif in UHM domain of 45 kDa-splicing factor (SPF45) and similar proteins
      cl25887
      Location:178 → 395
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

    3. XM_022057900.1 → XP_021913592.1  splicing factor 45

      UniProtKB/TrEMBL
      A0A067RPB4
      Conserved Domains (2) summary
      cd12647
      Location:300 → 395
      RRM_UHM_SPF45; RNA recognition motif in UHM domain of 45 kDa-splicing factor (SPF45) and similar proteins
      cl25887
      Location:178 → 395
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

    4. XM_022057898.1 → XP_021913590.1  splicing factor 45

      UniProtKB/TrEMBL
      A0A067RPB4
      Conserved Domains (2) summary
      cd12647
      Location:300 → 395
      RRM_UHM_SPF45; RNA recognition motif in UHM domain of 45 kDa-splicing factor (SPF45) and similar proteins
      cl25887
      Location:178 → 395
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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