U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    LOC8079717 WD repeat-containing protein 20 homolog [ Sorghum bicolor (sorghum) ]

    Gene ID: 8079717, updated on 22-Oct-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC8079717
    Gene description
    WD repeat-containing protein 20 homolog
    Locus tag
    SORBI_3005G059600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sorghum bicolor
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC8079717 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 5 NC_012874.2 (6154528..6163347)

    Chromosome 5 - NC_012874.2Genomic Context describing neighboring genes Neighboring gene putative pentatricopeptide repeat-containing protein At4g17915 Neighboring gene protein TPLATE Neighboring gene cleavage stimulating factor 64 Neighboring gene NAC domain-containing protein 41

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_012874.2 Chromosome 5 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    WD repeat-containing protein 20 homolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Genomic

    1. NC_012874.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

      Range
      6154528..6163347
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002449051.2 → XP_002449096.1  WD repeat-containing protein 20 homolog

      See identical proteins and their annotated locations for XP_002449096.1

      UniProtKB/TrEMBL
      A0A1Z5RGY3, A0A921QW00, C5Y633
      Conserved Domains (2) summary
      sd00039
      Location:237 → 273
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:304 → 514
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials