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    LOC8054357 subtilisin-like protease SBT1.6 [ Sorghum bicolor (sorghum) ]

    Gene ID: 8054357, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC8054357
    Gene description
    subtilisin-like protease SBT1.6
    Locus tag
    SORBI_3001G439800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sorghum bicolor
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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    Genomic context

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    See LOC8054357 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 1 NC_012870.2 (71779207..71782167)

    Chromosome 1 - NC_012870.2Genomic Context describing neighboring genes Neighboring gene 26S proteasome non-ATPase regulatory subunit 4 homolog Neighboring gene actin-depolymerizing factor 5 Neighboring gene proline-rich receptor-like protein kinase PERK2 Neighboring gene small GTPase LIP1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_012870.2 Chromosome 1 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    subtilisin-like protease SBT1.6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Genomic

    1. NC_012870.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

      Range
      71779207..71782167
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002465528.2 → XP_002465573.1  subtilisin-like protease SBT1.6

      See identical proteins and their annotated locations for XP_002465573.1

      UniProtKB/TrEMBL
      A0A921S4D6, C5WR08
      Conserved Domains (4) summary
      cd04852
      Location:116 → 593
      Peptidases_S8_3; Peptidase S8 family domain, uncharacterized subfamily 3
      COG1404
      Location:219 → 345
      AprE; Serine protease, subtilisin family [Posttranslational modification, protein turnover, chaperones]
      cd02120
      Location:363 → 488
      PA_subtilisin_like; PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from ...
      pfam05922
      Location:37 → 117
      Inhibitor_I9; Peptidase inhibitor I9
    Nucleotide Protein
    Heading Accession and Version

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