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    LOC110412589 OTU domain-containing protein 5 [ Herrania umbratica ]

    Gene ID: 110412589, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC110412589
    Gene description
    OTU domain-containing protein 5
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Herrania umbratica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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    Genomic context

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    See LOC110412589 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    100 current ASM216827v2 (GCF_002168275.1) Unplaced Scaffold NW_018397257.1 (7924421..7929599, complement)

    NW_018397257.1Genomic Context describing neighboring genes Neighboring gene nicalin-1 Neighboring gene small RNA-binding protein 11, chloroplastic Neighboring gene mRNA-decapping enzyme-like protein Neighboring gene casparian strip membrane protein 2-like Neighboring gene mitochondrial fission protein ELM1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_018397257 Unplaced Scaffold Reference ASM216827v2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables K63-linked deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    OTU domain-containing protein 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Herrania umbratica Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM216827v2

    Genomic

    1. NW_018397257.1 Reference ASM216827v2

      Range
      7924421..7929599 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021423160.1 → XP_021278835.1  OTU domain-containing protein 5

      UniProtKB/TrEMBL
      A0A6J0ZWS4
      Conserved Domains (1) summary
      cl19932
      Location:254 → 363
      OTU; OTU-like cysteine protease

    2. XM_021423161.1 → XP_021278836.1  OTU domain-containing protein 5

      UniProtKB/TrEMBL
      A0A6J0ZWS4
      Conserved Domains (1) summary
      cl19932
      Location:254 → 363
      OTU; OTU-like cysteine protease

    3. XM_021423159.1 → XP_021278834.1  OTU domain-containing protein 5

      UniProtKB/TrEMBL
      A0A6J0ZWS4
      Conserved Domains (1) summary
      cl19932
      Location:254 → 363
      OTU; OTU-like cysteine protease
    Nucleotide Protein
    Heading Accession and Version

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