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    IBSP integrin binding sialoprotein [ Sus scrofa (pig) ]

    Gene ID: 397137, updated on 17-Aug-2024

    Summary

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    Official Symbol
    IBSPprovided by VGNC
    Official Full Name
    integrin binding sialoproteinprovided by VGNC
    Primary source
    VGNC:VGNC:98040
    See related
    Ensembl:ENSSSCG00000009219
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    human mouse all
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    Genomic context

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    See IBSP in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 8 NC_010450.4 (131208281..131222048, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 8 NC_010450.3 (140438439..140452241, complement)

    Chromosome 8 - NC_010450.4Genomic Context describing neighboring genes Neighboring gene secreted phosphoprotein 1 Neighboring gene matrix extracellular phosphoglycoprotein Neighboring gene uncharacterized LOC106504772 Neighboring gene dentin matrix acidic phosphoprotein 1 Neighboring gene dentin sialophosphoprotein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Characterization of porcine bone sialoprotein: primary structure and cellular expression. Shapiro HS, et al. Matrix, 1993 Nov. PMID 8309422
    2. Characterization of fetal porcine bone sialoproteins, secreted phosphoprotein I (SPPI, osteopontin), bone sialoprotein, and a 23-kDa glycoprotein. Demonstration that the 23-kDa glycoprotein is derived from the carboxyl terminus of SPPI. Zhang Q, et al. J Biol Chem, 1990 May 5. PMID 2332443
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in bone mineralization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in extracellular matrix organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ossification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    bone sialoprotein 2
    Names
    Bone sialoprotein 2
    integrin-binding sialoprotein (bone sialoprotein, bone sialoprotein II)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010450.4 Reference Sscrofa11.1 Primary Assembly

      Range
      131208281..131222048 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003129337.3 → XP_003129385.1  bone sialoprotein 2

      UniProtKB/TrEMBL
      A0A8W4FP23
      Related
      ENSSSCP00000029623.2, ENSSSCT00000034512.4
      Conserved Domains (1) summary
      pfam05432
      Location:17 → 316
      BSP_II; Bone sialoprotein II (BSP-II)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P31936.2 GenPept UniProtKB/Swiss-Prot:P31936

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