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    ZNF169 zinc finger protein 169 [ Sus scrofa (pig) ]

    Gene ID: 100515432, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ZNF169provided by VGNC
    Official Full Name
    zinc finger protein 169provided by VGNC
    Primary source
    VGNC:VGNC:98420
    See related
    Ensembl:ENSSSCG00000032834
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in spleen (RPKM 1.1), kidney (RPKM 0.9) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See ZNF169 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (43503225..43561299)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (44956020..44963137)

    Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene microRNA let-7f-2 Neighboring gene microRNA let-7d Neighboring gene interleukin 1 beta Neighboring gene interleukin 1 alpha

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription repressor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein 169

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

      Range
      43503225..43561299
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021087016.1 → XP_020942675.1  zinc finger protein 169 isoform X7

      UniProtKB/TrEMBL
      A0A4X1UY33, A0A8D0R1H6
      Conserved Domains (2) summary
      COG5048
      Location:163 → 529
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:345 → 365
      ZF_C2H2; C2H2 Zn finger [structural motif]

    2. XM_021087002.1 → XP_020942661.1  zinc finger protein 169 isoform X1

      UniProtKB/TrEMBL
      A0A8D0QS30
      Conserved Domains (3) summary
      smart00349
      Location:32 → 91
      KRAB; krueppel associated box
      COG5048
      Location:237 → 603
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:419 → 439
      ZF_C2H2; C2H2 Zn finger [structural motif]

    3. XM_021087005.1 → XP_020942664.1  zinc finger protein 169 isoform X1

      UniProtKB/TrEMBL
      A0A8D0QS30
      Conserved Domains (3) summary
      smart00349
      Location:32 → 91
      KRAB; krueppel associated box
      COG5048
      Location:237 → 603
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:419 → 439
      ZF_C2H2; C2H2 Zn finger [structural motif]

    4. XM_021087009.1 → XP_020942668.1  zinc finger protein 169 isoform X4

      UniProtKB/TrEMBL
      A0A8D0PG64, A0A8D0QS30
      Conserved Domains (3) summary
      smart00349
      Location:1 → 60
      KRAB; krueppel associated box
      COG5048
      Location:206 → 572
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:388 → 408
      ZF_C2H2; C2H2 Zn finger [structural motif]

    5. XM_021087014.1 → XP_020942673.1  zinc finger protein 169 isoform X5

      UniProtKB/TrEMBL
      A0A287BFC4, A0A4X1UXR7, A0A8D0QS30, A0A8D1W8Q0
      Related
      ENSSSCP00000054775.2, ENSSSCT00000045315.3
      Conserved Domains (3) summary
      smart00349
      Location:1 → 60
      KRAB; krueppel associated box
      COG5048
      Location:205 → 571
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:387 → 407
      ZF_C2H2; C2H2 Zn finger [structural motif]

    6. XM_021087017.1 → XP_020942676.1  zinc finger protein 169 isoform X8

      UniProtKB/TrEMBL
      A0A4X1UY33, A0A8D0R1H6
      Conserved Domains (2) summary
      COG5048
      Location:154 → 520
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:336 → 356
      ZF_C2H2; C2H2 Zn finger [structural motif]

    7. XM_021087001.1 → XP_020942660.1  zinc finger protein 169 isoform X1

      UniProtKB/TrEMBL
      A0A8D0QS30
      Conserved Domains (3) summary
      smart00349
      Location:32 → 91
      KRAB; krueppel associated box
      COG5048
      Location:237 → 603
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:419 → 439
      ZF_C2H2; C2H2 Zn finger [structural motif]

    8. XM_021087006.1 → XP_020942665.1  zinc finger protein 169 isoform X2

      UniProtKB/TrEMBL
      A0A8D0QS30, A0A8D0WWJ9
      Conserved Domains (3) summary
      smart00349
      Location:32 → 91
      KRAB; krueppel associated box
      COG5048
      Location:236 → 602
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:418 → 438
      ZF_C2H2; C2H2 Zn finger [structural motif]

    9. XM_021087008.1 → XP_020942667.1  zinc finger protein 169 isoform X3

      UniProtKB/TrEMBL
      A0A287AMD2, A0A4X1UXW8, A0A8D0QRZ8
      Conserved Domains (3) summary
      smart00349
      Location:14 → 73
      KRAB; krueppel associated box
      COG5048
      Location:219 → 585
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:401 → 421
      ZF_C2H2; C2H2 Zn finger [structural motif]

    10. XM_021087010.1 → XP_020942669.1  zinc finger protein 169 isoform X4

      UniProtKB/TrEMBL
      A0A8D0PG64, A0A8D0QS30
      Conserved Domains (3) summary
      smart00349
      Location:1 → 60
      KRAB; krueppel associated box
      COG5048
      Location:206 → 572
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:388 → 408
      ZF_C2H2; C2H2 Zn finger [structural motif]

    11. XM_021087007.1 → XP_020942666.1  zinc finger protein 169 isoform X3

      UniProtKB/TrEMBL
      A0A287AMD2, A0A4X1UXW8, A0A8D0QRZ8
      Conserved Domains (3) summary
      smart00349
      Location:14 → 73
      KRAB; krueppel associated box
      COG5048
      Location:219 → 585
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:401 → 421
      ZF_C2H2; C2H2 Zn finger [structural motif]

    12. XM_021087003.1 → XP_020942662.1  zinc finger protein 169 isoform X1

      UniProtKB/TrEMBL
      A0A8D0QS30
      Conserved Domains (3) summary
      smart00349
      Location:32 → 91
      KRAB; krueppel associated box
      COG5048
      Location:237 → 603
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:419 → 439
      ZF_C2H2; C2H2 Zn finger [structural motif]

    13. XM_021087011.1 → XP_020942670.1  zinc finger protein 169 isoform X4

      UniProtKB/TrEMBL
      A0A8D0PG64, A0A8D0QS30
      Conserved Domains (3) summary
      smart00349
      Location:1 → 60
      KRAB; krueppel associated box
      COG5048
      Location:206 → 572
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:388 → 408
      ZF_C2H2; C2H2 Zn finger [structural motif]

    14. XM_021087012.1 → XP_020942671.1  zinc finger protein 169 isoform X4

      UniProtKB/TrEMBL
      A0A8D0PG64, A0A8D0QS30
      Conserved Domains (3) summary
      smart00349
      Location:1 → 60
      KRAB; krueppel associated box
      COG5048
      Location:206 → 572
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:388 → 408
      ZF_C2H2; C2H2 Zn finger [structural motif]

    15. XM_021087013.1 → XP_020942672.1  zinc finger protein 169 isoform X4

      UniProtKB/TrEMBL
      A0A8D0PG64, A0A8D0QS30
      Conserved Domains (3) summary
      smart00349
      Location:1 → 60
      KRAB; krueppel associated box
      COG5048
      Location:206 → 572
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:388 → 408
      ZF_C2H2; C2H2 Zn finger [structural motif]

    16. XM_021087015.1 → XP_020942674.1  zinc finger protein 169 isoform X6

      UniProtKB/TrEMBL
      A0A4X1UY33, A0A8D0R1H6
      Conserved Domains (2) summary
      COG5048
      Location:164 → 530
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:346 → 366
      ZF_C2H2; C2H2 Zn finger [structural motif]

    17. XM_021087018.1 → XP_020942677.1  zinc finger protein 169 isoform X8

      UniProtKB/TrEMBL
      A0A4X1UY33, A0A8D0R1H6
      Conserved Domains (2) summary
      COG5048
      Location:154 → 520
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:336 → 356
      ZF_C2H2; C2H2 Zn finger [structural motif]

    18. XM_021087019.1 → XP_020942678.1  zinc finger protein 169 isoform X9

      UniProtKB/TrEMBL
      A0A4X1UY33, A0A8D0R1H6
      Conserved Domains (2) summary
      COG5048
      Location:144 → 510
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:326 → 346
      ZF_C2H2; C2H2 Zn finger [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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