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    LOC9310433 probable polygalacturonase At3g15720 [ Arabidopsis lyrata subsp. lyrata ]

    Gene ID: 9310433, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC9310433
    Gene description
    probable polygalacturonase At3g15720
    Locus tag
    ARALYDRAFT_326950
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See LOC9310433 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302550.1 (12791580..12795119, complement)

    NW_003302550.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9310431 Neighboring gene kinesin-like protein KIN-14S Neighboring gene mitochondrial Rho GTPase 1 Neighboring gene peroxisomal adenine nucleotide carrier 2 Neighboring gene mitogen-activated protein kinase kinase kinase 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003302550 Unplaced Scaffold Reference v.1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables polygalacturonase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable polygalacturonase At3g15720
    Names
    glycoside hydrolase family 28 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v.1.0 Primary Assembly

    Genomic

    1. NW_003302550.1 Reference v.1.0 Primary Assembly

      Range
      12791580..12795119 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021020589.1 → XP_020876248.1  probable polygalacturonase At3g15720

      UniProtKB/TrEMBL
      D7M636
      Conserved Domains (1) summary
      PLN03010
      Location:5 → 399
      PLN03010; polygalacturonase
    Nucleotide Protein
    Heading Accession and Version

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