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    LOC9316255 UTP:RNA uridylyltransferase 1 [ Arabidopsis lyrata subsp. lyrata ]

    Gene ID: 9316255, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC9316255
    Gene description
    UTP:RNA uridylyltransferase 1
    Locus tag
    ARALYDRAFT_483698
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See LOC9316255 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302552.1 (22200223..22203330)

    NW_003302552.1Genomic Context describing neighboring genes Neighboring gene probable carboxylesterase 8 Neighboring gene probable carboxylesterase 9 Neighboring gene glyoxylate/hydroxypyruvate reductase HPR3 Neighboring gene histone deacetylase complex subunit SAP18

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003302552 Unplaced Scaffold Reference v.1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA uridylyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA 3' uridylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    UTP:RNA uridylyltransferase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v.1.0 Primary Assembly

    Genomic

    1. NW_003302552.1 Reference v.1.0 Primary Assembly

      Range
      22200223..22203330
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002880142.2 → XP_002880188.1  UTP:RNA uridylyltransferase 1

      See identical proteins and their annotated locations for XP_002880188.1

      UniProtKB/TrEMBL
      D7LCL1
      Conserved Domains (3) summary
      cd05402
      Location:449 → 559
      NT_PAP_TUTase; Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases
      COG5260
      Location:381 → 733
      TRF4; DNA polymerase sigma [Replication, recombination and repair]
      pfam03828
      Location:648 → 707
      PAP_assoc; Cid1 family poly A polymerase
    Nucleotide Protein
    Heading Accession and Version

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