AGL17 AGAMOUS-like 17 [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: AGL17
Official Full Name: AGAMOUS-like 17
Primary source: TAIR:AT2G22630
Locus tag: AT2G22630
See related: Araport:AT2G22630
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: AGAMOUS-like 17; T9I22.7; T9I22_7
Summary: Encodes a MADs domain containing protein involved in promoting flowering. Loss of function mutations show delayed flowering in long days and reduced levels of LFY and AP1 expression.
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Genomic context

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See AGL17 in Genome Data Viewer

Location:: chromosome: 2

Exon count:: 7

Sequence:: Chromosome: 2; NC_003071.7 (9618207..9622163)

Chromosome 2 - NC_003071.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

The activitiy of the flowering promoter, AGAMOUS-LIKE 17, acting in the photoperiod pathway of A. thaliana independently of FT, is reported.
Title: AGAMOUS-LIKE 17, a novel flowering promoter, acts in a FT-independent photoperiod pathway.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_127828.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity	ISS Inferred from Sequence or Structural Similarity more info	PubMed
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed
enables protein dimerization activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within positive regulation of long-day photoperiodism, flowering	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in positive regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulation of DNA-templated transcription	ISS Inferred from Sequence or Structural Similarity more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: AGAMOUS-like 17

NP_179848.1

AGAMOUS-like 17 (AGL17); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of long-day photoperiodism, flowering; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 21 (TAIR:AT4G37940.1); Has 7392 Blast hits to 7386 proteins in 937 species: Archae - 2; Bacteria - 31; Metazoa - 726; Fungi - 311; Plants - 6203; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003071.7 Reference assembly

Range

9618207..9622163

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001335805.1 → NP_001324454.1 AGAMOUS-like 17 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/Swiss-Prot

Q38840, Q9ZQ50

UniProtKB/TrEMBL

A0A178W215, A0A384L577, A0A7G2EB00, C0SV55

Conserved Domains (2) summary

cd00265
Location:2 → 73

MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...

pfam01486
Location:81 → 171

K-box; K-box region
NM_127828.3 → NP_179848.1 AGAMOUS-like 17 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_179848.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q38840, Q9ZQ50

UniProtKB/TrEMBL

A0A178W215, A0A384L577, A0A7G2EB00, C0SV55

Conserved Domains (2) summary

cd00265
Location:2 → 73

MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...

pfam01486
Location:81 → 171

K-box; K-box region