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    Carbohydrate-binding X8 domain superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844286, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Carbohydrate-binding X8 domain superfamily protein
    Primary source
    TAIR:AT1G79480
    Locus tag
    AT1G79480
    See related
    Araport:AT1G79480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T8K14.10; T8K14_10
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (29897597..29899604, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ALA-interacting subunit 5 Neighboring gene Terpenoid cyclases/Protein prenyltransferases superfamily protein Neighboring gene Aldolase-type TIM barrel family protein Neighboring gene uncharacterized protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene Aldolase-type TIM barrel family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001124149.1
    NM_106596.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Carbohydrate-binding X8 domain superfamily protein
    NP_001117621.1
    • Carbohydrate-binding X8 domain superfamily protein; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT5G67460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_178066.2
    • Carbohydrate-binding X8 domain superfamily protein; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT5G67460.1); Has 160219 Blast hits to 72886 proteins in 2601 species: Archae - 191; Bacteria - 25459; Metazoa - 60697; Fungi - 27560; Plants - 16034; Viruses - 4026; Other Eukaryotes - 26252 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29897597..29899604 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106596.4 → NP_178066.2  Carbohydrate-binding X8 domain superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178066.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WVR8, A0A654EQC6, Q5Q0D0
      Conserved Domains (2) summary
      smart00768
      Location:311 → 394
      X8; Possibly involved in carbohydrate binding
      PRK14971
      Location:222 → 290
      PRK14971; DNA polymerase III subunit gamma/tau

    2. NM_001124149.1 → NP_001117621.1  Carbohydrate-binding X8 domain superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001117621.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WVR8, F4IF51
      Conserved Domains (1) summary
      smart00768
      Location:310 → 393
      X8; Possibly involved in carbohydrate binding
    Nucleotide Protein
    Heading Accession and Version

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