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    electron protein, putative (Protein of unknown function, DUF547) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840901, updated on 18-Sep-2024

    Summary

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    Official Full Name
    electron protein, putative (Protein of unknown function, DUF547)
    Primary source
    TAIR:AT1G43020
    Locus tag
    AT1G43020
    See related
    Araport:AT1G43020
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F13A11.7; F13A11_7
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (16155278..16157950)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene F-box/associated interaction domain protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene pseudo Neighboring gene SAUR-like auxin-responsive protein family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001036068.2
    NM_001123955.2
    NM_001123956.1
    NM_001333206.1
    NM_103461.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    electron protein, putative (Protein of unknown function, DUF547)
    NP_001117427.1
    • Protein of unknown function, DUF547; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, male gametophyte, root; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT1G21060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001117428.1
    • Protein of unknown function, DUF547; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, male gametophyte, root; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT1G21060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001319160.1
    • Protein of unknown function, DUF547; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT1G21060.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_175001.3
    • Protein of unknown function, DUF547; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT1G21060.1); Has 538 Blast hits to 520 proteins in 64 species: Archae - 4; Bacteria - 30; Metazoa - 26; Fungi - 0; Plants - 451; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      16155278..16157950
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103461.5 → NP_175001.3  electron protein, putative (Protein of unknown function, DUF547) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175001.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WMC6, Q6E2A4
      Conserved Domains (2) summary
      pfam04784
      Location:227 → 361
      DUF547; Protein of unknown function, DUF547
      pfam14389
      Location:49 → 88
      Lzipper-MIP1; Leucine-zipper of ternary complex factor MIP1

    2. NM_001123955.2 → NP_001117427.1  electron protein, putative (Protein of unknown function, DUF547) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001117427.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W5T4, B3H6P0
      Conserved Domains (2) summary
      pfam04784
      Location:227 → 249
      DUF547; Protein of unknown function, DUF547
      pfam14389
      Location:49 → 88
      Lzipper-MIP1; Leucine-zipper of ternary complex factor MIP1

    3. NM_001333206.1 → NP_001319160.1  electron protein, putative (Protein of unknown function, DUF547) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IB28, Q6E2A3

    4. NM_001036068.2 → NP_001031145.1  electron protein, putative (Protein of unknown function, DUF547) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031145.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IB28, Q6E2A3
      Conserved Domains (2) summary
      pfam04784
      Location:227 → 249
      DUF547; Protein of unknown function, DUF547
      pfam14389
      Location:49 → 88
      Lzipper-MIP1; Leucine-zipper of ternary complex factor MIP1

    5. NM_001123956.1 → NP_001117428.1  electron protein, putative (Protein of unknown function, DUF547) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001117428.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q6E2A2, Q6E2A3
      Conserved Domains (2) summary
      pfam04784
      Location:227 → 249
      DUF547; Protein of unknown function, DUF547
      pfam14389
      Location:49 → 88
      Lzipper-MIP1; Leucine-zipper of ternary complex factor MIP1
    Nucleotide Protein
    Heading Accession and Version

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