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    Tsc22d3 TSC22 domain family, member 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 83514, updated on 9-Dec-2024

    Summary

    Official Symbol
    Tsc22d3provided by RGD
    Official Full Name
    TSC22 domain family, member 3provided by RGD
    Primary source
    RGD:621654
    See related
    EnsemblRapid:ENSRNOG00000056135 AllianceGenome:RGD:621654
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Gilz; Dsipi
    Summary
    Involved in body fluid secretion. Predicted to be located in nucleus. Orthologous to human TSC22D3 (TSC22 domain family member 3). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Muscle (RPKM 469.6), Adrenal (RPKM 399.8) and 9 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Tsc22d3 in Genome Data Viewer
    Location:
    Xq32
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (109006410..109066389, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (104217898..104277886, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (111884285..111944693, complement)

    Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene FERM and PDZ domain containing 3 Neighboring gene phosphoribosyl pyrophosphate synthetase 1 Neighboring gene ribosomal protein L23a, pseudogene 9 Neighboring gene U6 spliceosomal RNA Neighboring gene midline 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Pathways from PubChem

    General protein information

    Preferred Names
    TSC22 domain family protein 3
    Names
    TSC22 domain family 3
    delta sleep inducing peptide, immunoreactor
    glucocorticoid-induced leucine zipper protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001400982.1NP_001387911.1  TSC22 domain family protein 3 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021
      UniProtKB/TrEMBL
      A0A8I5ZQF5
      Conserved Domains (1) summary
      cd21940
      Location:122199
      ZIP_TSC22D3; leucine zipper domain found in TSC22 domain family protein 3
    2. NM_001400983.1NP_001387912.1  TSC22 domain family protein 3 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021
      UniProtKB/TrEMBL
      A0A8I5ZQF5
      Conserved Domains (1) summary
      cd21940
      Location:122199
      ZIP_TSC22D3; leucine zipper domain found in TSC22 domain family protein 3
    3. NM_031345.2NP_112635.1  TSC22 domain family protein 3 isoform 2

      See identical proteins and their annotated locations for NP_112635.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021
      UniProtKB/Swiss-Prot
      Q9EQZ1
      UniProtKB/TrEMBL
      A6HLR6
      Related
      ENSRNOP00000072713.1, ENSRNOT00000085118.3
      Conserved Domains (1) summary
      pfam01166
      Location:58114
      TSC22; TSC-22/dip/bun family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086039.1 Reference GRCr8

      Range
      109006410..109066389 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008773447.4XP_008771669.1  TSC22 domain family protein 3 isoform X1

      See identical proteins and their annotated locations for XP_008771669.1

      UniProtKB/TrEMBL
      A0A8I5ZQF5
      Conserved Domains (1) summary
      cd21940
      Location:122199
      ZIP_TSC22D3; leucine zipper domain found in TSC22 domain family protein 3
    2. XM_006234249.5XP_006234311.1  TSC22 domain family protein 3 isoform X1

      See identical proteins and their annotated locations for XP_006234311.1

      UniProtKB/TrEMBL
      A0A8I5ZQF5
      Conserved Domains (1) summary
      cd21940
      Location:122199
      ZIP_TSC22D3; leucine zipper domain found in TSC22 domain family protein 3
    3. XM_063280331.1XP_063136401.1  TSC22 domain family protein 3 isoform X2