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    FUT13 fucosyltransferase 13 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843530, updated on 18-Sep-2024

    Summary

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    Official Symbol
    FUT13
    Official Full Name
    fucosyltransferase 13
    Primary source
    TAIR:AT1G71990
    Locus tag
    AT1G71990
    See related
    Araport:AT1G71990
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS FUCOSYLTRANSFERASE 4; ATFT4; ATFUT13; F17M19.14; F17M19_14; FT4-M; fucosyltransferase 13; FUCTC
    Summary
    This gene encodes a Lewis-type alpha 1,4-fucosyltransferase
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    Genomic context

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    See FUT13 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (27100210..27102292)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Protease-associated (PA) RING/U-box zinc finger family protein Neighboring gene Plant neutral invertase family protein Neighboring gene TCP family transcription factor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A unique beta1,3-galactosyltransferase is indispensable for the biosynthesis of N-glycans containing Lewis a structures in Arabidopsis thaliana. Strasser R, et al. Plant Cell, 2007 Jul. PMID 17630273, Free PMC Article
    2. Characterization of a family of Arabidopsis genes related to xyloglucan fucosyltransferase1. Sarria R, et al. Plant Physiol, 2001 Dec. PMID 11743104, Free PMC Article
    3. Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. Parsons HT, et al. Plant Cell, 2019 Sep. PMID 31266899, Free PMC Article
    4. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_105857.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables fucosyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables glycosyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within Lewis a epitope biosynthetic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in protein glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in Golgi trans cisterna HDA PubMed 

    General protein information

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    Preferred Names
    fucosyltransferase 13
    NP_177344.2
    • fucosyltransferase 13 (FUT13); FUNCTIONS IN: transferase activity, transferring glycosyl groups, fucosyltransferase activity; INVOLVED IN: Lewis a epitope biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 10 (InterPro:IPR001503), Alpha-(1, 3)-fucosyltransferase/alpha-(1, 4)-fucosyltransferase, plant (InterPro:IPR017177); BEST Arabidopsis thaliana protein match is: fucosyltransferase 11 (TAIR:AT3G19280.1); Has 1516 Blast hits to 1512 proteins in 188 species: Archae - 4; Bacteria - 145; Metazoa - 1010; Fungi - 0; Plants - 129; Viruses - 3; Other Eukaryotes - 225 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      27100210..27102292
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105857.4 → NP_177344.2  fucosyltransferase 13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177344.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8RYC1, Q9C8W3
      UniProtKB/TrEMBL
      A0A5S9WTC5, A0A654EN66, Q0V7Y9
      Conserved Domains (1) summary
      pfam00852
      Location:216 → 389
      Glyco_transf_10; Glycosyltransferase family 10 (fucosyltransferase) C-term
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C8W3.2

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