U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    LOC104707997 G-box-binding factor 2-like [ Camelina sativa (false flax) ]

    Gene ID: 104707997, updated on 9-Nov-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC104707997
    Gene description
    G-box-binding factor 2-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Camelina sativa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC104707997 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    101 current Cs (GCF_000633955.1) 8 NC_025692.1 (22875125..22879774, complement)

    Chromosome 8 - NC_025692.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104707994 Neighboring gene mitochondrial adenine nucleotide transporter ADNT1 Neighboring gene uncharacterized LOC104707995 Neighboring gene GDSL esterase/lipase At4g01130-like Neighboring gene uncharacterized LOC104708000

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_025692.1 Chromosome 8 Reference Cs

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    G-box-binding factor 2-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Camelina sativa Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cs

    Genomic

    1. NC_025692.1 Reference Cs

      Range
      22875125..22879774 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010424471.2 → XP_010422773.1  G-box-binding factor 2-like isoform X5

      Conserved Domains (4) summary
      cd14702
      Location:253 → 302
      bZIP_plant_GBF1; coiled coil [structural motif]
      pfam00170
      Location:252 → 311
      bZIP_1; bZIP transcription factor
      pfam07777
      Location:1 → 96
      MFMR; G-box binding protein MFMR
      pfam16596
      Location:116 → 240
      MFMR_assoc; Disordered region downstream of MFMR

    2. XM_010424469.2 → XP_010422771.1  G-box-binding factor 2-like isoform X2

      Conserved Domains (4) summary
      cd14702
      Location:258 → 307
      bZIP_plant_GBF1; coiled coil [structural motif]
      pfam00170
      Location:257 → 316
      bZIP_1; bZIP transcription factor
      pfam07777
      Location:1 → 96
      MFMR; G-box binding protein MFMR
      pfam16596
      Location:116 → 245
      MFMR_assoc; Disordered region downstream of MFMR

    3. XM_010424470.2 → XP_010422772.1  G-box-binding factor 2-like isoform X4

      Conserved Domains (4) summary
      cd14702
      Location:253 → 302
      bZIP_plant_GBF1; coiled coil [structural motif]
      pfam00170
      Location:252 → 311
      bZIP_1; bZIP transcription factor
      pfam07777
      Location:1 → 96
      MFMR; G-box binding protein MFMR
      pfam16596
      Location:116 → 240
      MFMR_assoc; Disordered region downstream of MFMR

    4. XM_010424472.2 → XP_010422774.1  G-box-binding factor 2-like isoform X6

      Conserved Domains (4) summary
      cd14702
      Location:253 → 302
      bZIP_plant_GBF1; coiled coil [structural motif]
      pfam00170
      Location:252 → 311
      bZIP_1; bZIP transcription factor
      pfam07777
      Location:1 → 96
      MFMR; G-box binding protein MFMR
      pfam16596
      Location:116 → 240
      MFMR_assoc; Disordered region downstream of MFMR

    5. XM_019228881.1 → XP_019084426.1  G-box-binding factor 2-like isoform X3

    6. XM_019228880.1 → XP_019084425.1  G-box-binding factor 2-like isoform X1

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases