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    TUB3 tubulin beta chain 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836391, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TUB3
    Official Full Name
    tubulin beta chain 3
    Primary source
    TAIR:AT5G62700
    Locus tag
    AT5G62700
    See related
    Araport:AT5G62700
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3; ATGCP3; MRG21.12; tubulin beta chain 3
    Summary
    encodes tubulin beta-2/beta-3 chain
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    Genomic context

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    See TUB3 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (25184258..25186777)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene H[+]-ATPase 11 Neighboring gene Major facilitator superfamily protein Neighboring gene tubulin beta chain 2 Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene Integral membrane HPP family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis casein kinase 1-like 6 contains a microtubule-binding domain and affects the organization of cortical microtubules, Ben-Nissan G, et al. Plant Physiol, 2008 Dec. PMID 18945931, Free PMC Article
    2. Phosducin-Like Protein 3 is required for microtubule-dependent steps of cell division but not for meristem growth in Arabidopsis. Castellano MM, et al. Plant Cell, 2008 Apr. PMID 18390592, Free PMC Article
    3. The small genome of Arabidopsis contains at least nine expressed beta-tubulin genes. Snustad DP, et al. Plant Cell, 1992 May. PMID 1498609, Free PMC Article
    4. Isolation and identification of ubiquitin-related proteins from Arabidopsis seedlings. Igawa T, et al. J Exp Bot, 2009. PMID 19429840, Free PMC Article
    5. Arabidopsis cell wall proteome defined using multidimensional protein identification technology. Bayer EM, et al. Proteomics, 2006 Jan. PMID 16287169

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_125665.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables structural constituent of cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in microtubule-based process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type cell wall HDA PubMed 
    located_in plasmodesma HDA PubMed 
    part_of tubulin complex TAS
    Traceable Author Statement
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tubulin beta chain 3
    NP_568960.1
    • tubulin beta chain 3 (TUB3); FUNCTIONS IN: structural molecule activity, GTP binding, GTPase activity; INVOLVED IN: response to cold; LOCATED IN: tubulin complex, cell wall; EXPRESSED IN: cultured cell, seed; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta chain 2 (TAIR:AT5G62690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25184258..25186777
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125665.4 → NP_568960.1  tubulin beta chain 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568960.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P29512, Q56YW9, Q9ASR0
      UniProtKB/TrEMBL
      A0A178ULE0, A0A178UP81, A0A5S9YGM9
      Conserved Domains (1) summary
      PLN00220
      Location:1 → 430
      PLN00220; tubulin beta chain; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q56YW9.2
    Q9ASR0.2

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