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    ELF5 proline-rich family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836385, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ELF5
    Official Full Name
    proline-rich family protein
    Primary source
    TAIR:AT5G62640
    Locus tag
    AT5G62640
    See related
    Araport:AT5G62640
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtELF5; EARLY FLOWERING 5; MRG21.6; MRG21_6
    Summary
    nuclear targeted protein involved in flowering time regulation that affects flowering time independent of FLC
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    Genomic context

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    See ELF5 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    10
    Sequence:
    Chromosome: 5; NC_003076.8 (25149329..25152563, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Putative membrane lipoprotein Neighboring gene hipl2 protein precursor Neighboring gene Tic22-like family protein Neighboring gene F-box and associated interaction domains-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. EARLY FLOWERING 5 acts as a floral repressor in Arabidopsis. Noh YS, et al. Plant J, 2004 May. PMID 15125772
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001037049.1
    NM_001161319.1
    NM_125659.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within photoperiodism, flowering IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of photoperiodism, flowering IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    proline-rich family protein
    NP_001032126.1
    • EARLY FLOWERING 5 (ELF5); CONTAINS InterPro DOMAIN/s: WW domain binding protein 11 (InterPro:IPR019007); Has 57717 Blast hits to 34716 proteins in 1290 species: Archae - 70; Bacteria - 6603; Metazoa - 26785; Fungi - 8532; Plants - 7708; Viruses - 1665; Other Eukaryotes - 6354 (source: NCBI BLink).
    NP_001154791.1
    • proline-rich family protein; CONTAINS InterPro DOMAIN/s: WW domain binding protein 11 (InterPro:IPR019007); Has 8610 Blast hits to 7436 proteins in 563 species: Archae - 8; Bacteria - 778; Metazoa - 3914; Fungi - 1570; Plants - 910; Viruses - 344; Other Eukaryotes - 1086 (source: NCBI BLink).
    NP_201070.1
    • EARLY FLOWERING 5 (ELF5); CONTAINS InterPro DOMAIN/s: WW domain binding protein 11 (InterPro:IPR019007); Has 56728 Blast hits to 34222 proteins in 1257 species: Archae - 64; Bacteria - 6447; Metazoa - 26252; Fungi - 8436; Plants - 7613; Viruses - 1668; Other Eukaryotes - 6248 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25149329..25152563 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125659.4 → NP_201070.1  proline-rich family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201070.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6QTF1, Q9LV14
      UniProtKB/TrEMBL
      A0A178UDD8, A0A5S9YIN6
      Conserved Domains (2) summary
      pfam09429
      Location:7 → 82
      Wbp11; WW domain binding protein 11
      pfam12622
      Location:122 → 150
      NpwBP; mRNA biogenesis factor

    2. NM_001037049.1 → NP_001032126.1  proline-rich family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001032126.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YIN6
      Conserved Domains (2) summary
      pfam09429
      Location:7 → 82
      Wbp11; WW domain binding protein 11
      pfam12622
      Location:124 → 146
      NpwBP; mRNA biogenesis factor

    3. NM_001161319.1 → NP_001154791.1  proline-rich family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154791.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YIN6, F4K7R6
      Conserved Domains (2) summary
      pfam09429
      Location:7 → 107
      Wbp11; WW domain binding protein 11
      pfam12622
      Location:144 → 168
      NpwBP; mRNA biogenesis factor
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LV14.1

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