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    rRNA processing protein-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836254, updated on 18-Sep-2024

    Summary

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    Official Full Name
    rRNA processing protein-like protein
    Primary source
    TAIR:AT5G61330
    Locus tag
    AT5G61330
    See related
    Araport:AT5G61330
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MFB13.10; MFB13_10
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    14
    Sequence:
    Chromosome: 5; NC_003076.8 (24657097..24661241, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Cytochrome c oxidase subunit Vc family protein Neighboring gene cytochrome P450, family 89, subfamily A, polypeptide 3 Neighboring gene uncharacterized protein Neighboring gene tRNA-Lys

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001345470.1
    NM_001345471.1
    NM_125526.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    rRNA processing protein-like protein
    NP_200941.2
    • rRNA processing protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAUB (InterPro:IPR012617); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      24657097..24661241 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125526.5 → NP_200941.2  rRNA processing protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200941.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654GD02, Q84W09, Q9FLK0
      Conserved Domains (2) summary
      pfam08164
      Location:350 → 425
      TRAUB; Apoptosis-antagonizing transcription factor, C-terminal
      pfam13339
      Location:143 → 271
      AATF-Che1; Apoptosis antagonizing transcription factor

    2. NM_001345470.1 → NP_001331141.1  rRNA processing protein-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BD18, A0A5S9YGQ0

    3. NM_001345471.1 → NP_001331140.1  rRNA processing protein-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654GD02, Q84W09, Q9FLK0
      Conserved Domains (2) summary
      pfam08164
      Location:350 → 425
      TRAUB; Apoptosis-antagonizing transcription factor, C-terminal
      pfam13339
      Location:143 → 271
      AATF-Che1; Apoptosis antagonizing transcription factor
    Nucleotide Protein
    Heading Accession and Version

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