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    YLS7 trichome birefringence-like protein (DUF828) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835238, updated on 18-Sep-2024

    Summary

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    Official Symbol
    YLS7
    Official Full Name
    trichome birefringence-like protein (DUF828)
    Primary source
    TAIR:AT5G51640
    Locus tag
    AT5G51640
    See related
    Araport:AT5G51640
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K17N15.19; K17N15_19; TBL17; TRICHOME BIREFRINGENCE-LIKE 17; YELLOW-LEAF-SPECIFIC GENE 7
    Summary
    Encodes leaf-senescence-related protein. A member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
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    Genomic context

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    See YLS7 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (20975180..20977668, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Ribosomal protein L11 family protein Neighboring gene Uncharacterized protein family (UPF0172) Neighboring gene Disease resistance protein (TIR-NBS-LRR class) family Neighboring gene uncharacterized protein Neighboring gene cleavage and polyadenylation specificity factor 160

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isolation and RNA gel blot analysis of genes that could serve as potential molecular markers for leaf senescence in Arabidopsis thaliana. Yoshida S, et al. Plant Cell Physiol, 2001 Feb. PMID 11230571
    2. Acetylation of homogalacturonan and rhamnogalacturonan-I is catalyzed by a suite of trichome birefringence-like proteins. Zhong R, et al. Plant J, 2024 Feb. PMID 37934816
    3. Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. Parsons HT, et al. Plant Cell, 2019 Sep. PMID 31266899, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_124543.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables O-acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables O-acyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within leaf senescence IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi trans cisterna HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    trichome birefringence-like protein (DUF828)
    NP_199977.1
    • YELLOW-LEAF-SPECIFIC GENE 7 (YLS7); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 18 (TAIR:AT4G25360.2); Has 1342 Blast hits to 1319 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1337; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      20975180..20977668 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124543.3 → NP_199977.1  trichome birefringence-like protein (DUF828) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199977.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FHM0
      UniProtKB/TrEMBL
      A0A178UMC7, A0A5S9YD43, A0AAF0XZ19
      Conserved Domains (2) summary
      pfam13839
      Location:190 → 490
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:137 → 189
      PMR5N; PMR5 N terminal Domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FHM0.1

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