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    LUC7 N terminus domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835215, updated on 18-Sep-2024

    Summary

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    Official Full Name
    LUC7 N terminus domain-containing protein
    Primary source
    TAIR:AT5G51410
    Locus tag
    AT5G51410
    See related
    Araport:AT5G51410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (20880558..20883908, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RNI-like superfamily protein Neighboring gene uncharacterized protein Neighboring gene PLAC8 family protein Neighboring gene miscRNA Neighboring gene long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein Neighboring gene conserved oligomeric Golgi complex component-related / COG complex component-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001203585.1
    NM_001344935.1
    NM_001344936.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding TAS
    Traceable Author Statement
    more info
    		  
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in mRNA splice site recognition IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of U1 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    LUC7 N terminus domain-containing protein
    NP_001190514.1
    • LUC7 N_terminus domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LUC7 related (InterPro:IPR004882); BEST Arabidopsis thaliana protein match is: LUC7 related protein (TAIR:AT3G03340.1).
    NP_001318778.1
    • LUC7 N_terminus domain-containing protein; CONTAINS InterPro DOMAIN/s: LUC7 related (InterPro:IPR004882); BEST Arabidopsis thaliana protein match is: LUC7 related protein (TAIR:AT3G03340.1); Has 11347 Blast hits to 6019 proteins in 331 species: Archae - 9; Bacteria - 137; Metazoa - 6515; Fungi - 1614; Plants - 1008; Viruses - 20; Other Eukaryotes - 2044 (source: NCBI BLink).
    NP_199954.1
    • LUC7 N_terminus domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LUC7 related (InterPro:IPR004882); BEST Arabidopsis thaliana protein match is: LUC7 related protein (TAIR:AT3G03340.1); Has 11347 Blast hits to 6019 proteins in 331 species: Archae - 9; Bacteria - 137; Metazoa - 6515; Fungi - 1614; Plants - 1008; Viruses - 20; Other Eukaryotes - 2044 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      20880558..20883908 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124520.3 → NP_199954.1  LUC7 N terminus domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199954.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U7E6, A0A384KE82, A0A5S9YE53, P93021, P94088
      Conserved Domains (1) summary
      pfam03194
      Location:2 → 250
      LUC7; LUC7 N_terminus

    2. NM_180839.2 → NP_851170.1  LUC7 N terminus domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851170.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U7E6, A0A384KE82, A0A5S9YE53, P93021, P94088
      Conserved Domains (1) summary
      pfam03194
      Location:2 → 250
      LUC7; LUC7 N_terminus

    3. NM_001344935.1 → NP_001318778.1  LUC7 N terminus domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U7E6, A0A384KE82, A0A5S9YE53, P93021, P94088
      Conserved Domains (1) summary
      pfam03194
      Location:2 → 250
      LUC7; LUC7 N_terminus

    4. NM_001344936.1 → NP_001331059.1  LUC7 N terminus domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U7E6, A0A384KE82, A0A5S9YE53, P93021, P94088
      Conserved Domains (1) summary
      pfam03194
      Location:2 → 250
      LUC7; LUC7 N_terminus

    5. NM_001203585.1 → NP_001190514.1  LUC7 N terminus domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190514.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U7E6, A0A384KE82, A0A5S9YE53, P93021, P94088
      Conserved Domains (1) summary
      pfam03194
      Location:2 → 250
      LUC7; LUC7 N_terminus
    Nucleotide Protein
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