U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    RECQSIM RECQ helicase SIM [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832830, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    RECQSIM
    Official Full Name
    RECQ helicase SIM
    Primary source
    TAIR:AT5G27680
    Locus tag
    AT5G27680
    See related
    Araport:AT5G27680
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    RECQ helicase SIM; T1G16.10; T1G16_10
    Summary
    DNA helicase
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See RECQSIM in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    16
    Sequence:
    Chromosome: 5; NC_003076.8 (9793745..9799149, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Trypsin family protein with PDZ domain-containing protein Neighboring gene histone H2A 7 Neighboring gene Heavy metal transport/detoxification superfamily protein Neighboring gene Ribosomal protein S21e

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The RecQ gene family in plants. Hartung F, et al. J Plant Physiol, 2006 Feb. PMID 16371241
    2. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001344027.1
    NM_001344029.1
    NM_001344030.1
    NM_001344031.1
    NM_122650.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 3'-5' DNA helicase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA duplex unwinding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in DNA recombination IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in DNA repair IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    RECQ helicase SIM
    NP_568499.1
    • RECQ helicase SIM (RECQSIM); FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: DNA recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal (InterPro:IPR018329), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RECQ helicase L2 (TAIR:AT1G31360.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      9793745..9799149 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344028.1 → NP_001330796.1  RECQ helicase SIM [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FT69
      UniProtKB/TrEMBL
      A0A5S9Y833
      Conserved Domains (5) summary
      smart00487
      Location:162 → 355
      DEXDc; DEAD-like helicases superfamily
      cd00079
      Location:486 → 600
      HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
      pfam00270
      Location:170 → 341
      DEAD; DEAD/DEAH box helicase
      pfam16124
      Location:612 → 663
      RecQ_Zn_bind; RecQ zinc-binding
      cl21463
      Location:8 → 42
      UBA_like_SF; UBA domain-like superfamily

    2. NM_122650.5 → NP_568499.1  RECQ helicase SIM [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568499.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FT69
      UniProtKB/TrEMBL
      A0A5S9Y833
      Conserved Domains (5) summary
      smart00487
      Location:162 → 355
      DEXDc; DEAD-like helicases superfamily
      cd00079
      Location:486 → 600
      HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
      pfam00270
      Location:170 → 341
      DEAD; DEAD/DEAH box helicase
      pfam16124
      Location:612 → 663
      RecQ_Zn_bind; RecQ zinc-binding
      cl21463
      Location:8 → 42
      UBA_like_SF; UBA domain-like superfamily

    3. NM_001344027.1 → NP_001330792.1  RECQ helicase SIM [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FT69
      UniProtKB/TrEMBL
      A0A5S9Y833
      Conserved Domains (5) summary
      smart00487
      Location:162 → 355
      DEXDc; DEAD-like helicases superfamily
      cd00079
      Location:486 → 600
      HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
      pfam00270
      Location:170 → 341
      DEAD; DEAD/DEAH box helicase
      pfam16124
      Location:612 → 663
      RecQ_Zn_bind; RecQ zinc-binding
      cl21463
      Location:8 → 42
      UBA_like_SF; UBA domain-like superfamily

    4. NM_001344029.1 → NP_001330794.1  RECQ helicase SIM [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FT69
      UniProtKB/TrEMBL
      A0A5S9Y833
      Conserved Domains (5) summary
      smart00487
      Location:162 → 355
      DEXDc; DEAD-like helicases superfamily
      cd00079
      Location:486 → 600
      HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
      pfam00270
      Location:170 → 341
      DEAD; DEAD/DEAH box helicase
      pfam16124
      Location:612 → 663
      RecQ_Zn_bind; RecQ zinc-binding
      cl21463
      Location:8 → 42
      UBA_like_SF; UBA domain-like superfamily

    5. NM_001344030.1 → NP_001330793.1  RECQ helicase SIM [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BBY3, A0A5S9Y833

    6. NM_001344031.1 → NP_001330795.1  RECQ helicase SIM [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BBY0, A0A5S9Y833
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FT69.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.