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    MYB9 myb domain protein 9 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831540, updated on 18-Sep-2024

    Summary

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    Official Symbol
    MYB9
    Official Full Name
    myb domain protein 9
    Primary source
    TAIR:AT5G16770
    Locus tag
    AT5G16770
    See related
    Araport:AT5G16770
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtMYB9; F5E19.110; F5E19_110; myb domain protein 9
    Summary
    Member of the R2R3 factor gene family.
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    Genomic context

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    See MYB9 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (5514717..5517153)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Transducin family protein / WD-40 repeat family protein Neighboring gene Inositol 1,3,4-trisphosphate 5/6-kinase family protein Neighboring gene SART-1 family Neighboring gene Tho complex subunit 7/Mft1p Neighboring gene Acyl-CoA N-acyltransferases (NAT) superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AtMYB92 enhances fatty acid synthesis and suberin deposition in leaves of Nicotiana benthamiana. To A, et al. Plant J, 2020 Jul. PMID 32246506
    2. A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis. Smit ME, et al. Plant Cell, 2020 Feb. PMID 31806676, Free PMC Article
    3. Transcriptional regulation of nitrogen-associated metabolism and growth. Gaudinier A, et al. Nature, 2018 Nov. PMID 30356219
    4. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001343462.1
    NM_001343463.1
    NM_121683.4
    NM_203063.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    myb domain protein 9
    NP_197179.2
    • myb domain protein 9 (MYB9); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 107 (TAIR:AT3G02940.1); Has 9105 Blast hits to 8386 proteins in 517 species: Archae - 0; Bacteria - 0; Metazoa - 783; Fungi - 490; Plants - 5992; Viruses - 3; Other Eukaryotes - 1837 (source: NCBI BLink).
    NP_974792.1
    • myb domain protein 9 (MYB9); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb transcription factor (InterPro:IPR015495), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb domain protein 107 (TAIR:AT3G02940.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      5514717..5517153
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_203063.2 → NP_974792.1  myb domain protein 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974792.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G237, A0A7G2FB26, F4KE69
      Conserved Domains (1) summary
      PLN03091
      Location:1 → 200
      PLN03091; hypothetical protein; Provisional

    2. NM_001343462.1 → NP_001330269.1  myb domain protein 9 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q6R054, Q9LFE1
      Conserved Domains (1) summary
      PLN03091
      Location:1 → 200
      PLN03091; hypothetical protein; Provisional

    3. NM_121683.4 → NP_197179.2  myb domain protein 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197179.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G237, A0A7G2FB26, F4KE69
      Conserved Domains (1) summary
      PLN03091
      Location:1 → 200
      PLN03091; hypothetical protein; Provisional

    4. NM_001343463.1 → NP_001330270.1  myb domain protein 9 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q6R054, Q9LFE1
      Conserved Domains (1) summary
      PLN03091
      Location:1 → 200
      PLN03091; hypothetical protein; Provisional
    Nucleotide Protein
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