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    Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831789, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Primary source
    TAIR:AT5G03560
    Locus tag
    AT5G03560
    See related
    Araport:AT5G03560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12E4.360; F12E4_360
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (900315..902770, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene permease, cytosine/purines, uracil, thiamine, allantoin family protein Neighboring gene iron regulated 2 Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001161222.2
    NM_001342714.1
    NM_001342715.1
    NM_120437.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables nucleobase:monoatomic cation symporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Tetratricopeptide repeat (TPR)-like superfamily protein
    NP_001318470.1
    • Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: nucleobase:cation symporter activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G38150.2); Has 33122 Blast hits to 10382 proteins in 236 species: Archae - 3; Bacteria - 11; Metazoa - 102; Fungi - 213; Plants - 32082; Viruses - 0; Other Eukaryotes - 711 (source: NCBI BLink).
    NP_568123.1
    • Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: DnaJ homologue, subfamily C, member 28, conserved domain (InterPro:IPR018961); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      900315..902770 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120437.4 → NP_568123.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568123.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y397, Q94F48
      Conserved Domains (2) summary
      PLN03085
      Location:20 → 240
      PLN03085; nucleobase:cation symporter-1; Provisional
      pfam09350
      Location:111 → 172
      DUF1992; Domain of unknown function (DUF1992)

    2. NM_001342714.1 → NP_001318470.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FXX3, F4KGN4

    3. NM_001342715.1 → NP_001331042.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FXX3, F4KGN4

    4. NM_001161222.2 → NP_001154694.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154694.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FXX3, F4KGN4
      Conserved Domains (3) summary
      TIGR00756
      Location:305 → 338
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:234 → 261
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:230 → 278
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version

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