U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    PQ-loop repeat family protein / transmembrane family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829838, updated on 18-Sep-2024

    Summary

    Official Full Name
    PQ-loop repeat family protein / transmembrane family protein
    Primary source
    TAIR:AT4G36850
    Locus tag
    AT4G36850
    See related
    Araport:AT4G36850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AP22.27; AP22_27
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Location:
    chromosome: 4
    Exon count:
    11
    Sequence:
    Chromosome: 4; NC_003075.7 (17353291..17356037, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene GNS1/SUR4 membrane protein family Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene LIM domain-containing protein Neighboring gene BEL1-like homeodomain 2

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_001342421.1
    NM_001342422.1
    NM_001342423.1
    NM_119849.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    PQ-loop repeat family protein / transmembrane family protein
    NP_568009.5
    • PQ-loop repeat family protein / transmembrane family protein; CONTAINS InterPro DOMAIN/s: Cystinosin/ERS1p repeat (InterPro:IPR006603); BEST Arabidopsis thaliana protein match is: PQ-loop repeat family protein / transmembrane family protein (TAIR:AT2G41050.1); Has 883 Blast hits to 635 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 204; Fungi - 499; Plants - 92; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      17353291..17356037 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119849.6NP_568009.5  PQ-loop repeat family protein / transmembrane family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568009.5

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y050, A0A654FW55, Q94AH7
      Conserved Domains (2) summary
      pfam04193
      Location:3387
      PQ-loop; PQ loop repeat
      cl01768
      Location:175291
      Phenol_MetA_deg; Putative MetA-pathway of phenol degradation
    2. NM_001342421.1NP_001329400.1  PQ-loop repeat family protein / transmembrane family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B7M8, C0Z2N7
    3. NM_001342423.1NP_001329401.1  PQ-loop repeat family protein / transmembrane family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UYY0, A0A1P8B7L3
    4. NM_001342422.1NP_001329399.1  PQ-loop repeat family protein / transmembrane family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UYY0, A0A1P8B7L3