U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    IAA29 indole-3-acetic acid inducible 29 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829361, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    IAA29
    Official Full Name
    indole-3-acetic acid inducible 29
    Primary source
    TAIR:AT4G32280
    Locus tag
    AT4G32280
    See related
    Araport:AT4G32280
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F10M6.1; indole-3-acetic acid inducible 29
    Summary
    Auxin inducible protein.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See IAA29 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (15583332..15584903)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Nucleotide/sugar transporter family protein Neighboring gene ncRNA Neighboring gene ENTH/ANTH/VHS superfamily protein Neighboring gene Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The Circadian Clock Influences the Long-Term Water Use Efficiency of Arabidopsis. Simon NML, et al. Plant Physiol, 2020 May. PMID 32179629, Free PMC Article
    2. General detoxification and stress responses are mediated by oxidized lipids through TGA transcription factors in Arabidopsis. Mueller S, et al. Plant Cell, 2008 Mar. PMID 18334669, Free PMC Article
    3. Arabidopsis WRKY57 functions as a node of convergence for jasmonic acid- and auxin-mediated signaling in jasmonic acid-induced leaf senescence. Jiang Y, et al. Plant Cell, 2014 Jan. PMID 24424094, Free PMC Article
    4. Phytochrome-interacting factor 4 and 5 (PIF4 and PIF5) activate the homeobox ATHB2 and auxin-inducible IAA29 genes in the coincidence mechanism underlying photoperiodic control of plant growth of Arabidopsis thaliana. Kunihiro A, et al. Plant Cell Physiol, 2011 Aug. PMID 21666227
    5. PIF4 and PIF5 transcription factors link blue light and auxin to regulate the phototropic response in Arabidopsis. Sun J, et al. Plant Cell, 2013 Jun. PMID 23757399, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Data indicate that PIF4 and PIF5 negatively regulate auxin signaling. that PIF4 and PIF5 negatively modulate auxin-mediated phototropism through directly activating IAA19 and IAA29, which physically interact with auxin factor7 (ARF7).
      Title: PIF4 and PIF5 transcription factors link blue light and auxin to regulate the phototropic response in Arabidopsis.
    2. an external coincidence model involving the clock-controlled PIF4/PIF5-ATHB2 pathway is crucial for the diurnal and photoperiodic control of plant growth in A. thaliana.
      Title: Phytochrome-interacting factor 4 and 5 (PIF4 and PIF5) activate the homeobox ATHB2 and auxin-inducible IAA29 genes in the coincidence mechanism underlying photoperiodic control of plant growth of Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001342130.1
    NM_001342131.1
    NM_119380.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to auxin TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within response to cyclopentenone IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to far red light IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to herbicide IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to red light IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    indole-3-acetic acid inducible 29
    NP_567891.1
    • indole-3-acetic acid inducible 29 (IAA29); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, response to cyclopentenone, response to red light, response to far red light; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indoleacetic acid-induced protein 10 (TAIR:AT1G04100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      15583332..15584903
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119380.3 → NP_567891.1  indole-3-acetic acid inducible 29 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567891.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93WC4
      UniProtKB/TrEMBL
      A0A654FUU5, E1A7W9, Q2VWA0
      Conserved Domains (1) summary
      pfam02309
      Location:93 → 240
      AUX_IAA; AUX/IAA family

    2. NM_001342130.1 → NP_001329438.1  indole-3-acetic acid inducible 29 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B7Q2, A0A5S9XYK8
      Conserved Domains (1) summary
      pfam02309
      Location:118 → 198
      AUX_IAA; AUX/IAA family

    3. NM_001342131.1 → NP_001329439.1  indole-3-acetic acid inducible 29 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B7S3, D3K0L2
      Conserved Domains (1) summary
      pfam02309
      Location:93 → 195
      AUX_IAA; AUX/IAA family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93WC4.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.