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    SDA1 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829279, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SDA1 family protein
    Primary source
    TAIR:AT4G31520
    Locus tag
    AT4G31520
    See related
    Araport:AT4G31520
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F3L17.90; F3L17_90
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    15
    Sequence:
    Chromosome: 4; NC_003075.7 (15278092..15282014, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene cytochrome P450, family 83, subfamily B, polypeptide 1 Neighboring gene major centromere autoantigen B-like protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene exocyst subunit exo70 family protein G1 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SDA1 family protein
    NP_194880.1
    • SDA1 family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Domain of unknown function, nucleolar NUC130/133, N-terminal (InterPro:IPR012977), Armadillo-type fold (InterPro:IPR016024), SDA1 (InterPro:IPR007949); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G13160.1); Has 8756 Blast hits to 5682 proteins in 453 species: Archae - 14; Bacteria - 613; Metazoa - 3270; Fungi - 1126; Plants - 516; Viruses - 196; Other Eukaryotes - 3021 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      15278092..15282014 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119301.2 → NP_194880.1  SDA1 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194880.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XYH6, Q9M082
      Conserved Domains (2) summary
      pfam05285
      Location:365 → 696
      SDA1; SDA1
      pfam08158
      Location:2 → 51
      NUC130_3NT; NUC130/3NT domain

    2. NM_001342091.1 → NP_001328456.1  SDA1 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B4Q7, A0A5S9XYH6
    Nucleotide Protein
    Heading Accession and Version

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