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    TET5 tetraspanin5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828440, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TET5
    Official Full Name
    tetraspanin5
    Primary source
    TAIR:AT4G23410
    Locus tag
    AT4G23410
    See related
    Araport:AT4G23410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F16G20.110; F16G20_110; tetraspanin5
    Summary
    Member of TETRASPANIN family
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    Genomic context

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    See TET5 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (12223953..12225508)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene plasma membrane intrinsic protein 1;5 Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene ncRNA Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional Analysis of the Arabidopsis TETRASPANIN Gene Family in Plant Growth and Development. Wang F, et al. Plant Physiol, 2015 Nov. PMID 26417009, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_118470.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in auxin-activated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within organ growth IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    tetraspanin5
    NP_194072.3
    • tetraspanin5 (TET5); INVOLVED IN: aging; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: tetraspanin6 (TAIR:AT3G12090.1); Has 435 Blast hits to 433 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 36; Fungi - 0; Plants - 389; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      12223953..12225508
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118470.4 → NP_194072.3  tetraspanin5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194072.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O81737, Q84WF6
      UniProtKB/TrEMBL
      A0A178UTQ4, A0A178UV00, A0A5S9XVS5
      Conserved Domains (1) summary
      pfam00335
      Location:5 → 240
      Tetraspannin; Tetraspanin family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84WF6.1

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