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    transglutaminase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827654, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transglutaminase family protein
    Primary source
    TAIR:AT4G19160
    Locus tag
    AT4G19160
    See related
    Araport:AT4G19160
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T18B16.130; T18B16_130
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (10477184..10480212)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene exopolysaccharide production negative regulator Neighboring gene Ankyrin repeat family protein Neighboring gene ncRNA Neighboring gene nine-cis-epoxycarotenoid dioxygenase 4 Neighboring gene GDA1/CD39 nucleoside phosphatase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_118035.2
    NM_202843.3
    NM_202844.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    transglutaminase family protein
    NP_567578.1
    • unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_974572.1
    • unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_974573.2
    • unknown protein; Has 315 Blast hits to 315 proteins in 152 species: Archae - 0; Bacteria - 250; Metazoa - 2; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      10477184..10480212
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001341327.1 → NP_001329835.1  transglutaminase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UW90, A0A1P8B8Y1

    2. NM_118035.2 → NP_567578.1  transglutaminase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567578.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UW90, Q949Y2
      Conserved Domains (3) summary
      sd00005
      Location:246 → 270
      TPR; TPR repeat [structural motif]
      pfam13369
      Location:31 → 186
      Transglut_core2; Transglutaminase-like superfamily
      pfam13371
      Location:223 → 278
      TPR_9; Tetratricopeptide repeat

    3. NM_202843.3 → NP_974572.1  transglutaminase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974572.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FQW2, F4JSG8
      Conserved Domains (3) summary
      sd00005
      Location:387 → 411
      TPR; TPR repeat [structural motif]
      pfam13369
      Location:172 → 327
      Transglut_core2; Transglutaminase-like superfamily
      pfam13371
      Location:364 → 419
      TPR_9; Tetratricopeptide repeat

    4. NM_202844.2 → NP_974573.2  transglutaminase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974573.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      C0Z2Z4, F4JSG7
      Conserved Domains (3) summary
      sd00005
      Location:374 → 399
      TPR; TPR repeat [structural motif]
      pfam13369
      Location:159 → 314
      Transglut_core2; Transglutaminase-like superfamily
      pfam13371
      Location:351 → 407
      TPR_9; Tetratricopeptide repeat
    Nucleotide Protein
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