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    Papain family cysteine protease [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826734, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Papain family cysteine protease
    Primary source
    TAIR:AT4G11320
    Locus tag
    AT4G11320
    See related
    Araport:AT4G11320
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtCP2; CP2; cysteine protease 2; F8L21.110; F8L21_110
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (6887166..6889879)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Papain family cysteine protease Neighboring gene ncRNA Neighboring gene MAP kinase 5 Neighboring gene Disease resistance protein (TIR-NBS-LRR class) family Neighboring gene transferring glycosyl group transferase (DUF604)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cysteine protease enhances plant-mediated bollworm RNA interference. Mao YB, et al. Plant Mol Biol, 2013 Sep. PMID 23460027, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001340705.1
    NM_117203.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables peptidase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within proteolysis IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Papain family cysteine protease
    NP_567377.1
    • Papain family cysteine protease; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Papain family cysteine protease (TAIR:AT4G11310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      6887166..6889879
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117203.4 → NP_567377.1  Papain family cysteine protease [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567377.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SUS9
      UniProtKB/TrEMBL
      A0A5S9XRB4
      Conserved Domains (2) summary
      smart00848
      Location:56 → 111
      Inhibitor_I29; Cathepsin propeptide inhibitor domain (I29)
      pfam00112
      Location:144 → 359
      Peptidase_C1; Papain family cysteine protease

    2. NM_001340705.1 → NP_001328659.1  Papain family cysteine protease [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SUS9
      UniProtKB/TrEMBL
      A0A5S9XRB4
      Conserved Domains (2) summary
      smart00848
      Location:56 → 111
      Inhibitor_I29; Cathepsin propeptide inhibitor domain (I29)
      pfam00112
      Location:144 → 359
      Peptidase_C1; Papain family cysteine protease
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SUS9.1

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